Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29665 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48503 * 109.47206 * 269.99889 * 3 2 1 5 5 H 1.48499 * 109.47394 * 30.00212 * 3 2 1 6 6 H 1.48506 * 109.47196 * 150.00173 * 3 2 1 7 7 C 1.46328 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99772 * 193.13490 * 7 2 1 9 9 C 1.38679 * 119.99827 * 13.13203 * 7 2 1 10 10 C 1.41181 * 120.50567 * 25.49429 * 9 7 2 11 11 C 1.37190 * 120.94227 * 180.25357 * 10 9 7 12 12 C 1.37991 * 122.20776 * 359.46069 * 11 10 9 13 13 N 1.48024 * 119.28555 * 180.29851 * 12 11 10 14 14 O 1.31702 * 120.00429 * 0.02562 * 13 12 11 15 15 O 1.31702 * 119.99896 * 180.02562 * 13 12 11 16 16 C 1.41461 * 121.42428 * 0.27686 * 12 11 10 17 17 C 1.39689 * 128.53596 * 179.97438 * 16 12 11 18 18 S 1.71477 * 106.37479 * 180.02562 * 17 16 12 19 19 N 1.68834 * 96.99168 * 359.97438 * 18 17 16 20 20 C 1.31344 * 109.26728 * 0.02562 * 19 18 17 21 21 H 0.97009 * 120.00214 * 359.97438 * 1 2 3 22 22 H 1.08006 * 119.53227 * 359.97438 * 10 9 7 23 23 H 1.08000 * 118.88943 * 179.74302 * 11 10 9 24 24 H 1.08002 * 126.80955 * 0.06188 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2966 0.0000 0.0000 3 14 2.2306 1.6178 0.0000 4 1 2.4781 2.0465 -1.4001 5 1 1.4281 2.6527 0.7001 6 1 3.5282 1.4402 0.7000 7 6 2.0283 -1.2672 -0.0006 8 1 3.0871 -1.2795 0.2120 9 6 1.3621 -2.4524 -0.2740 10 6 0.1824 -2.4489 -1.0496 11 6 -0.4866 -3.6154 -1.3211 12 6 -0.0432 -4.8406 -0.8666 13 7 -0.8124 -6.0595 -1.2036 14 8 -1.9069 -5.9677 -1.9304 15 8 -0.4022 -7.2360 -0.7767 16 6 1.1307 -4.9567 -0.0859 17 6 1.7101 -6.1102 0.4482 18 16 3.1121 -5.6000 1.2934 19 7 2.9588 -3.9503 0.9690 20 6 1.8839 -3.7497 0.2413 21 1 -0.4851 0.8401 0.0004 22 1 -0.2013 -1.5141 -1.4308 23 1 -1.3882 -3.5739 -1.9144 24 1 1.3473 -7.1225 0.3480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615947026.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = 48.345138 kcal Electronic energy + Delta-G solvation = -15280.399784 eV Core-core repulsion = 12481.613854 eV Total energy + Delta-G solvation = -2798.785930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.91346 -36.80871 -35.64049 -33.83039 -32.56794 -31.67520 -29.11569 -27.18385 -25.03891 -23.63561 -20.92794 -20.43288 -18.35732 -17.77179 -16.66391 -16.20682 -15.92758 -15.20878 -14.43885 -14.33456 -13.88160 -13.43987 -13.05904 -12.85360 -12.31028 -12.06642 -11.73265 -11.17623 -10.82168 -10.68909 -10.66748 -10.30645 -10.00142 -9.56340 -9.47602 -9.24308 -9.17730 -8.34389 -7.99431 -7.72215 -5.50579 0.59105 1.32821 2.15809 2.23960 2.28587 2.42696 2.44684 2.70225 2.73346 2.94845 3.12804 3.46772 4.52001 5.06160 5.37926 5.72337 5.82781 5.94821 6.17987 6.36003 6.50035 6.61860 6.75142 7.00728 7.10110 7.31765 7.47235 7.56396 7.94370 8.47482 8.70686 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.008278 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.660094 B = 3381.648492 C = 4490.291972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.658 5.658 2 C 0.035 3.965 3 Si 0.947 3.053 4 H -0.248 1.248 5 H -0.259 1.259 6 H -0.242 1.242 7 C -0.228 4.228 8 H 0.125 0.875 9 C 0.106 3.894 10 C -0.217 4.217 11 C 0.011 3.989 12 C -0.132 4.132 13 N 0.058 4.942 14 O -0.350 6.350 15 O -0.339 6.339 16 C -0.045 4.045 17 C -0.264 4.264 18 S 0.239 5.761 19 N -0.463 5.463 20 C 0.145 3.855 21 H 0.320 0.680 22 H 0.142 0.858 23 H 0.123 0.877 24 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 8.707 2.049 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.203 4.203 3 Si 0.766 3.234 4 H -0.172 1.172 5 H -0.183 1.183 6 H -0.165 1.165 7 C -0.255 4.255 8 H 0.143 0.857 9 C 0.096 3.904 10 C -0.240 4.240 11 C -0.010 4.010 12 C -0.242 4.242 13 N 0.470 4.530 14 O -0.495 6.495 15 O -0.488 6.488 16 C -0.060 4.060 17 C -0.412 4.412 18 S 0.395 5.605 19 N -0.284 5.284 20 C -0.033 4.033 21 H 0.134 0.866 22 H 0.160 0.840 23 H 0.141 0.859 24 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.685 8.804 3.338 12.154 hybrid contribution -1.810 0.109 -1.079 2.110 sum 5.875 8.913 2.260 10.912 Atomic orbital electron populations 1.69156 1.09351 1.34280 1.14685 1.28259 0.95502 1.03932 0.92572 0.85578 0.80783 0.75698 0.81381 1.17176 1.18254 1.16505 1.22084 0.98084 0.89541 1.15806 0.85717 1.18485 0.93009 0.87464 0.91406 1.20766 0.99005 0.97146 1.07078 1.20100 0.97231 0.89761 0.93909 1.18933 1.00067 0.82991 1.22163 1.49635 1.01020 1.03062 0.99274 1.96074 1.14489 1.95276 1.43671 1.95975 1.76343 1.12627 1.63834 1.19230 0.95877 0.90941 0.99988 1.27174 1.02585 1.03659 1.07751 1.83072 1.25320 1.00019 1.52074 1.76129 1.20948 1.09970 1.21367 1.22262 0.90840 0.94447 0.95769 0.86608 0.84011 0.85869 0.78950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -10.73 10.87 55.97 0.61 -10.12 14 2 C 0.03 0.54 5.38 -15.22 -0.08 0.46 14 3 Si 0.95 11.00 29.66 -169.99 -5.04 5.95 14 4 H -0.25 -2.88 7.11 56.52 0.40 -2.47 14 5 H -0.26 -2.93 7.11 56.52 0.40 -2.53 14 6 H -0.24 -2.86 7.11 56.52 0.40 -2.46 14 7 C -0.23 -4.10 9.20 -36.17 -0.33 -4.43 14 8 H 0.13 2.08 7.96 -52.49 -0.42 1.66 14 9 C 0.11 2.22 5.80 -104.14 -0.60 1.61 14 10 C -0.22 -4.54 8.69 -38.85 -0.34 -4.88 14 11 C 0.01 0.25 9.41 -40.05 -0.38 -0.12 14 12 C -0.13 -3.36 6.97 -78.81 -0.55 -3.91 14 13 N 0.06 1.63 4.98 34.51 0.17 1.80 14 14 O -0.35 -10.06 19.04 -31.57 -0.60 -10.66 14 15 O -0.34 -9.60 16.87 -31.57 -0.53 -10.13 14 16 C -0.05 -1.08 5.97 -105.03 -0.63 -1.71 14 17 C -0.26 -5.80 10.47 31.27 0.33 -5.48 14 18 S 0.24 4.46 23.61 -107.50 -2.54 1.92 14 19 N -0.46 -9.70 11.85 34.56 0.41 -9.29 14 20 C 0.14 3.23 7.04 -80.50 -0.57 2.67 14 21 H 0.32 4.28 8.27 -40.82 -0.34 3.94 14 22 H 0.14 2.74 6.03 -52.48 -0.32 2.42 14 23 H 0.12 2.70 7.44 -52.49 -0.39 2.31 14 24 H 0.19 4.29 6.12 -52.49 -0.32 3.96 14 LS Contribution 242.93 15.07 3.66 3.66 Total: -1.00 -28.20 242.93 -7.59 -35.79 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -0.58 Total: 6.84 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -3.15 Total: -15.79 kcal Atomic # 7 Polarization: -18.79 SS G_CDS: 1.19 Total: -17.60 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.13 Total: -20.79 kcal Atomic # 14 Polarization: 11.00 SS G_CDS: -5.04 Total: 5.95 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -2.54 Total: 1.92 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.20 -7.59 -35.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615947026.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.134 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds