Wall clock time and date at job start Mon Mar 30 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47570 * 35.81217 * 3 2 1 5 5 C 1.36847 * 119.99743 * 264.64297 * 4 3 2 6 6 H 1.08000 * 119.99920 * 149.26686 * 5 4 3 7 7 C 1.38795 * 120.00138 * 329.26453 * 5 4 3 8 8 N 1.31594 * 119.99972 * 332.32375 * 7 5 4 9 9 Si 1.86796 * 119.99938 * 152.32066 * 7 5 4 10 10 H 1.48506 * 109.47156 * 85.00097 * 9 7 5 11 11 H 1.48503 * 109.47259 * 205.00203 * 9 7 5 12 12 H 1.48499 * 109.47386 * 324.99996 * 9 7 5 13 13 C 1.39299 * 119.99864 * 84.63689 * 4 3 2 14 14 C 1.39084 * 120.08701 * 179.72658 * 13 4 3 15 15 C 1.38047 * 119.90676 * 179.74748 * 14 13 4 16 16 C 1.38331 * 120.09018 * 0.53321 * 15 14 13 17 17 C 1.50697 * 119.90694 * 179.72298 * 16 15 14 18 18 Cl 1.80295 * 109.47260 * 270.01834 * 17 16 15 19 19 C 1.38324 * 120.17894 * 359.73645 * 16 15 14 20 20 C 1.38051 * 120.09381 * 359.97438 * 19 16 15 21 21 H 1.09001 * 109.47351 * 275.80902 * 3 2 1 22 22 H 1.08999 * 109.46839 * 155.81558 * 3 2 1 23 23 H 0.96999 * 120.00002 * 180.02562 * 8 7 5 24 24 H 1.08000 * 120.04465 * 0.02562 * 14 13 4 25 25 H 1.07998 * 119.95303 * 180.27724 * 15 14 13 26 26 H 1.09006 * 109.47589 * 30.02188 * 17 16 15 27 27 H 1.09002 * 109.47246 * 150.02042 * 17 16 15 28 28 H 1.08002 * 119.95273 * 179.97438 * 19 16 15 29 29 H 1.07993 * 120.05072 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1192 -0.8082 5 6 3.4299 -2.3026 -0.2071 6 1 3.3096 -3.2328 -0.7426 7 6 3.9222 -2.3076 1.0905 8 7 4.5721 -1.2603 1.5517 9 14 3.6623 -3.8007 2.1824 10 1 4.7340 -4.7957 1.9238 11 1 3.7059 -3.3855 3.6076 12 1 2.3405 -4.4081 1.8841 13 6 3.2228 -0.9793 -2.1884 14 6 3.6921 -2.0394 -2.9567 15 6 3.8104 -1.8984 -4.3249 16 6 3.4733 -0.7012 -4.9305 17 6 3.6100 -0.5498 -6.4236 18 17 5.2599 0.0614 -6.8172 19 6 3.0114 0.3573 -4.1692 20 6 2.8846 0.2226 -2.8011 21 1 2.9714 -0.1032 1.0224 22 1 2.9708 0.9383 -0.4210 23 1 4.9165 -1.2639 2.4585 24 1 3.9594 -2.9730 -2.4842 25 1 4.1706 -2.7225 -4.9228 26 1 3.4570 -1.5170 -6.9025 27 1 2.8644 0.1574 -6.7869 28 1 2.7497 1.2905 -4.6458 29 1 2.5243 1.0496 -2.2074 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020435582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:21 Heat of formation + Delta-G solvation = 39.538362 kcal Electronic energy + Delta-G solvation = -15329.542023 eV Core-core repulsion = 12664.163591 eV Total energy + Delta-G solvation = -2665.378432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45843 -38.25806 -36.95027 -36.43999 -34.10335 -31.98663 -31.60885 -29.26983 -27.42825 -24.91197 -23.27556 -21.60491 -19.54185 -18.77754 -17.75830 -16.74868 -16.25937 -15.91643 -15.33091 -15.27291 -15.10913 -14.49522 -14.40709 -14.09979 -13.84341 -13.70775 -13.28978 -13.23823 -12.91531 -12.59469 -12.51975 -12.29483 -12.15583 -11.52991 -11.24997 -11.12486 -11.06665 -10.26414 -9.59272 -8.58286 -8.17316 -5.82918 0.63771 0.83013 1.38913 1.47647 1.55252 1.64208 1.81370 1.86248 2.30983 2.82562 3.12795 3.22969 3.54098 4.03831 4.09162 4.30735 4.42663 4.48936 4.67469 4.77320 4.95746 5.06209 5.13891 5.41231 5.46867 5.69927 5.79589 5.94555 6.06834 6.39422 6.57212 6.71220 7.34393 7.67381 8.65108 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.006018 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.715919 B = 4651.536617 C = 5247.354997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.222 3.778 3 C 0.203 3.797 4 N -0.461 5.461 5 C -0.334 4.334 6 H 0.086 0.914 7 C 0.005 3.995 8 N -0.878 5.878 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.277 1.277 13 C 0.202 3.798 14 C -0.221 4.221 15 C -0.049 4.049 16 C -0.210 4.210 17 C 0.039 3.961 18 Cl -0.218 7.218 19 C -0.046 4.046 20 C -0.240 4.240 21 H 0.137 0.863 22 H 0.122 0.878 23 H 0.276 0.724 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 1.819 -9.276 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.096 4.096 3 C 0.075 3.925 4 N -0.153 5.153 5 C -0.462 4.462 6 H 0.104 0.896 7 C -0.198 4.198 8 N -0.515 5.515 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.202 1.202 13 C 0.091 3.909 14 C -0.244 4.244 15 C -0.068 4.068 16 C -0.214 4.214 17 C -0.022 4.022 18 Cl -0.192 7.192 19 C -0.065 4.065 20 C -0.263 4.263 21 H 0.154 0.846 22 H 0.139 0.861 23 H 0.086 0.914 24 H 0.127 0.873 25 H 0.148 0.852 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.219 1.891 -8.842 9.124 hybrid contribution 0.487 -0.732 0.966 1.307 sum -0.731 1.158 -7.876 7.994 Atomic orbital electron populations 1.81002 1.14302 1.10302 1.11215 1.30909 0.96432 0.91228 0.91044 1.19177 0.78294 0.92499 1.02512 1.42217 1.58995 1.12167 1.01888 1.19453 1.42754 0.85477 0.98498 0.89617 1.25817 0.93997 1.00565 0.99451 1.70044 1.30704 1.32425 1.18292 0.85377 0.78700 0.79158 0.77863 1.19633 1.20137 1.20199 1.18535 0.93457 0.94287 0.84620 1.20651 1.10451 0.99142 0.94148 1.20842 0.95574 0.97130 0.93229 1.19391 1.11557 0.95453 0.94976 1.23082 0.83207 1.03134 0.92819 1.98716 1.34963 1.90513 1.94995 1.20817 0.95326 0.97965 0.92426 1.20655 1.13146 0.96609 0.95907 0.84561 0.86084 0.91399 0.87295 0.85193 0.87261 0.87037 0.84707 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -20.89 18.54 20.00 0.37 -20.51 15 2 C 0.22 8.98 15.51 89.44 1.39 10.37 15 3 C 0.20 8.05 5.13 84.57 0.43 8.49 15 4 N -0.46 -20.55 2.65 -521.70 -1.38 -21.93 15 5 C -0.33 -16.03 8.67 84.04 0.73 -15.31 15 6 H 0.09 4.15 6.60 -2.91 -0.02 4.13 15 7 C 0.01 0.25 4.80 84.86 0.41 0.65 15 8 N -0.88 -41.94 11.48 21.65 0.25 -41.70 15 9 Si 0.96 38.34 29.63 68.60 2.03 40.38 15 10 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 11 H -0.28 -10.73 7.11 99.48 0.71 -10.03 15 12 H -0.28 -11.24 7.11 99.48 0.71 -10.53 15 13 C 0.20 8.37 6.48 38.36 0.25 8.62 15 14 C -0.22 -8.74 9.26 22.43 0.21 -8.54 15 15 C -0.05 -1.58 9.69 22.25 0.22 -1.36 15 16 C -0.21 -6.14 5.26 -19.82 -0.10 -6.24 15 17 C 0.04 0.86 6.78 71.23 0.48 1.34 15 18 Cl -0.22 -5.54 29.13 -2.72 -0.08 -5.62 15 19 C -0.05 -1.42 9.69 22.25 0.22 -1.20 15 20 C -0.24 -8.63 9.12 22.43 0.20 -8.42 15 21 H 0.14 5.81 5.33 -2.39 -0.01 5.80 15 22 H 0.12 4.14 6.50 -2.39 -0.02 4.13 15 23 H 0.28 12.46 8.31 -92.71 -0.77 11.69 15 24 H 0.11 4.53 6.32 -2.91 -0.02 4.51 15 25 H 0.13 3.55 8.06 -2.91 -0.02 3.52 15 26 H 0.11 1.96 8.08 -2.38 -0.02 1.94 15 27 H 0.11 1.95 8.08 -2.39 -0.02 1.93 15 28 H 0.14 3.34 8.06 -2.91 -0.02 3.32 15 29 H 0.12 3.94 6.17 -2.91 -0.02 3.92 15 Total: -1.00 -53.34 274.63 6.80 -46.54 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.18 Total: 14.46 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.43 Total: -11.61 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -0.76 Total: -84.14 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 17 Polarization: -5.54 SS G_CDS: -0.08 Total: -5.62 kcal Total: -53.34 6.80 -46.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020435582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.077 kcal (2) G-P(sol) polarization free energy of solvation -53.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds