Wall clock time and date at job start Mon Mar 30 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 Cl 1.80305 * 109.46843 * 135.22081 * 3 2 1 5 5 C 1.52997 * 109.47034 * 15.22147 * 3 2 1 6 6 C 1.50703 * 109.47349 * 59.99983 * 5 3 2 7 7 H 1.07995 * 119.99755 * 359.97438 * 6 5 3 8 8 C 1.37876 * 119.99897 * 179.97438 * 6 5 3 9 9 N 1.31508 * 120.00126 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99910 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46999 * 90.00104 * 10 8 6 12 12 H 1.48498 * 109.46593 * 209.99776 * 10 8 6 13 13 H 1.48498 * 109.47233 * 329.99704 * 10 8 6 14 14 C 1.52997 * 109.47052 * 255.21776 * 3 2 1 15 15 C 1.50701 * 109.47212 * 305.00032 * 14 3 2 16 16 C 1.38674 * 120.41757 * 90.00021 * 15 14 3 17 17 C 1.38621 * 118.42130 * 179.97438 * 16 15 14 18 18 C 1.38227 * 119.16178 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76380 * 359.97438 * 18 17 16 20 20 C 1.31884 * 121.72115 * 359.70717 * 19 18 17 21 21 H 1.09004 * 109.46881 * 180.02562 * 5 3 2 22 22 H 1.09002 * 109.47016 * 299.99647 * 5 3 2 23 23 H 0.97003 * 120.00761 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.47153 * 185.00034 * 14 3 2 25 25 H 1.09001 * 109.46832 * 65.00225 * 14 3 2 26 26 H 1.08004 * 120.78805 * 359.97438 * 16 15 14 27 27 H 1.08009 * 120.42155 * 180.02562 * 17 16 15 28 28 H 1.08001 * 119.61799 * 179.97438 * 18 17 16 29 29 H 1.08007 * 119.61602 * 180.31062 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 17 3.2084 1.2076 -1.1974 5 6 3.1186 -1.3910 -0.3787 6 6 2.6164 -1.7537 -1.7526 7 1 1.9949 -1.0611 -2.3005 8 6 2.9505 -2.9698 -2.3098 9 7 2.5119 -3.2865 -3.5084 10 14 4.0250 -4.1681 -1.3616 11 1 3.1668 -5.0603 -0.5414 12 1 4.8177 -4.9840 -2.3160 13 1 4.9446 -3.4125 -0.4736 14 6 3.1178 0.3689 1.3947 15 6 2.5163 1.6842 1.8184 16 6 1.3128 1.7166 2.5065 17 6 0.7974 2.9490 2.8766 18 6 1.4950 4.0966 2.5494 19 7 2.6371 4.0278 1.8940 20 6 3.1601 2.8727 1.5315 21 1 4.2086 -1.3906 -0.3783 22 1 2.7556 -2.1206 0.3452 23 1 2.7466 -4.1422 -3.9004 24 1 4.2041 0.4564 1.3732 25 1 2.8298 -0.4075 2.1035 26 1 0.7894 0.8033 2.7483 27 1 -0.1375 3.0119 3.4139 28 1 1.1000 5.0607 2.8337 29 1 4.1002 2.8557 1.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034188554.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:05 Heat of formation + Delta-G solvation = 44.349784 kcal Electronic energy + Delta-G solvation = -15465.113691 eV Core-core repulsion = 12799.943897 eV Total energy + Delta-G solvation = -2665.169794 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23919 -37.42393 -35.28697 -34.17423 -33.11816 -32.04984 -31.05961 -27.79249 -24.58941 -23.56560 -21.97601 -21.65223 -17.46642 -17.06267 -16.93212 -16.11722 -15.37650 -14.62006 -14.53081 -13.82327 -13.49117 -13.35437 -13.07445 -12.85999 -12.54082 -12.31946 -11.91105 -11.68383 -11.49372 -11.35068 -10.81293 -10.50962 -10.29976 -10.04229 -9.89495 -9.65642 -9.44322 -9.37044 -8.93623 -8.67588 -6.14983 -4.16976 1.08486 1.28279 2.18034 3.21082 3.26241 3.27928 3.30844 3.63309 3.82209 4.14426 4.32112 4.42573 4.73126 4.81093 4.95845 4.98762 5.06579 5.18048 5.38004 5.48272 5.76511 5.78907 5.83261 6.09556 6.25996 6.62517 6.69571 6.79823 7.47514 7.97357 7.98814 8.33320 8.89426 9.42184 10.97771 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036641 B = 0.006537 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.982407 B = 4282.056259 C = 4341.891115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.231 3.769 3 C 0.145 3.855 4 Cl -0.135 7.135 5 C -0.010 4.010 6 C -0.527 4.527 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.262 1.262 14 C -0.077 4.077 15 C -0.140 4.140 16 C -0.066 4.066 17 C -0.173 4.173 18 C 0.093 3.907 19 N -0.485 5.485 20 C 0.119 3.881 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.266 0.734 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 9.101 13.393 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.087 4.087 3 C 0.116 3.884 4 Cl -0.109 7.109 5 C -0.048 4.048 6 C -0.565 4.565 7 H 0.099 0.901 8 C -0.127 4.127 9 N -0.529 5.529 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.186 1.186 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.193 4.193 18 C -0.064 4.064 19 N -0.194 5.194 20 C -0.038 4.038 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.377 9.836 12.940 16.312 hybrid contribution 0.376 -1.536 0.335 1.617 sum 1.752 8.300 13.274 15.753 Atomic orbital electron populations 1.81039 1.12401 1.08556 1.07938 1.28361 0.94281 0.92843 0.93210 1.20905 0.82654 0.95178 0.89676 1.98728 1.88513 1.60714 1.62938 1.20055 0.98422 0.86824 0.99525 1.20912 1.33168 1.03516 0.98878 0.90084 1.24919 0.95408 0.97669 0.94700 1.69886 1.44863 1.22819 1.15332 0.86904 0.81242 0.81685 0.80265 1.20212 1.21054 1.18595 1.21039 1.02466 0.94348 0.93758 1.20852 0.96522 0.96878 0.99956 1.21527 0.94273 0.98556 0.94852 1.22087 1.01448 0.93448 1.02312 1.22733 0.90983 0.98390 0.94286 1.67709 1.12028 1.28944 1.10672 1.22748 0.99332 0.86771 0.94984 0.93033 0.94436 0.92448 0.87433 0.88251 0.85164 0.84994 0.83022 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.93 18.54 42.15 0.78 -8.15 15 2 C 0.23 4.56 11.27 -20.76 -0.23 4.32 15 3 C 0.14 2.54 0.67 -93.41 -0.06 2.47 15 4 Cl -0.14 -2.45 25.74 -51.86 -1.33 -3.78 15 5 C -0.01 -0.21 3.15 -27.88 -0.09 -0.29 15 6 C -0.53 -13.71 8.48 -34.44 -0.29 -14.01 15 7 H 0.08 2.37 7.38 -52.49 -0.39 1.98 15 8 C 0.08 2.07 5.47 -17.82 -0.10 1.97 15 9 N -0.89 -26.36 13.96 55.43 0.77 -25.59 15 10 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 15 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 13 H -0.26 -5.40 6.54 56.52 0.37 -5.03 15 14 C -0.08 -0.99 4.52 -27.88 -0.13 -1.12 15 15 C -0.14 -1.83 4.40 -104.48 -0.46 -2.29 15 16 C -0.07 -0.84 8.79 -39.28 -0.35 -1.18 15 17 C -0.17 -1.97 10.11 -39.44 -0.40 -2.37 15 18 C 0.09 1.09 11.18 -17.55 -0.20 0.90 15 19 N -0.49 -6.69 10.36 -13.25 -0.14 -6.83 15 20 C 0.12 1.57 9.88 -17.55 -0.17 1.40 15 21 H 0.05 0.99 7.20 -51.93 -0.37 0.62 15 22 H 0.04 0.73 7.57 -51.93 -0.39 0.34 15 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 24 H 0.11 1.14 8.09 -51.93 -0.42 0.72 15 25 H 0.10 1.10 8.10 -51.93 -0.42 0.68 15 26 H 0.13 1.56 8.06 -52.48 -0.42 1.14 15 27 H 0.13 1.17 8.06 -52.48 -0.42 0.74 15 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 29 H 0.16 1.88 7.92 -52.48 -0.42 1.46 15 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -30.94 273.49 -5.78 -36.72 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -2.85 Total: -1.39 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.47 Total: -10.20 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 1.42 Total: -40.57 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.33 Total: -3.78 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.94 -5.78 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034188554.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.071 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds