Wall clock time and date at job start Mon Mar 30 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 Cl 1.80305 * 109.46843 * 135.22081 * 3 2 1 5 5 C 1.52997 * 109.47034 * 15.22147 * 3 2 1 6 6 C 1.50703 * 109.47349 * 59.99983 * 5 3 2 7 7 H 1.07995 * 119.99755 * 359.97438 * 6 5 3 8 8 C 1.37876 * 119.99897 * 179.97438 * 6 5 3 9 9 N 1.31508 * 120.00126 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99910 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46999 * 90.00104 * 10 8 6 12 12 H 1.48498 * 109.46593 * 209.99776 * 10 8 6 13 13 H 1.48498 * 109.47233 * 329.99704 * 10 8 6 14 14 C 1.52997 * 109.47052 * 255.21776 * 3 2 1 15 15 C 1.50701 * 109.47212 * 305.00032 * 14 3 2 16 16 C 1.38674 * 120.41757 * 90.00021 * 15 14 3 17 17 C 1.38621 * 118.42130 * 179.97438 * 16 15 14 18 18 C 1.38227 * 119.16178 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76380 * 359.97438 * 18 17 16 20 20 C 1.31884 * 121.72115 * 359.70717 * 19 18 17 21 21 H 1.09004 * 109.46881 * 180.02562 * 5 3 2 22 22 H 1.09002 * 109.47016 * 299.99647 * 5 3 2 23 23 H 0.97003 * 120.00761 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.47153 * 185.00034 * 14 3 2 25 25 H 1.09001 * 109.46832 * 65.00225 * 14 3 2 26 26 H 1.08004 * 120.78805 * 359.97438 * 16 15 14 27 27 H 1.08009 * 120.42155 * 180.02562 * 17 16 15 28 28 H 1.08001 * 119.61799 * 179.97438 * 18 17 16 29 29 H 1.08007 * 119.61602 * 180.31062 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 17 3.2084 1.2076 -1.1974 5 6 3.1186 -1.3910 -0.3787 6 6 2.6164 -1.7537 -1.7526 7 1 1.9949 -1.0611 -2.3005 8 6 2.9505 -2.9698 -2.3098 9 7 2.5119 -3.2865 -3.5084 10 14 4.0250 -4.1681 -1.3616 11 1 3.1668 -5.0603 -0.5414 12 1 4.8177 -4.9840 -2.3160 13 1 4.9446 -3.4125 -0.4736 14 6 3.1178 0.3689 1.3947 15 6 2.5163 1.6842 1.8184 16 6 1.3128 1.7166 2.5065 17 6 0.7974 2.9490 2.8766 18 6 1.4950 4.0966 2.5494 19 7 2.6371 4.0278 1.8940 20 6 3.1601 2.8727 1.5315 21 1 4.2086 -1.3906 -0.3783 22 1 2.7556 -2.1206 0.3452 23 1 2.7466 -4.1422 -3.9004 24 1 4.2041 0.4564 1.3732 25 1 2.8298 -0.4075 2.1035 26 1 0.7894 0.8033 2.7483 27 1 -0.1375 3.0119 3.4139 28 1 1.1000 5.0607 2.8337 29 1 4.1002 2.8557 1.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034188554.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:05 Heat of formation + Delta-G solvation = 25.319210 kcal Electronic energy + Delta-G solvation = -15465.938918 eV Core-core repulsion = 12799.943897 eV Total energy + Delta-G solvation = -2665.995021 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19047 -38.82930 -36.78835 -35.58147 -34.77560 -33.16843 -32.40313 -29.22868 -25.96228 -24.50523 -23.53802 -22.83188 -18.97803 -18.73998 -17.94324 -17.14785 -16.71661 -15.95242 -15.90857 -15.38536 -14.68299 -14.53528 -14.35094 -14.14189 -14.01923 -13.72659 -13.29502 -13.23919 -12.87349 -12.50867 -12.42149 -12.09863 -11.81268 -11.73399 -11.38078 -11.20106 -10.71038 -10.68691 -10.37081 -9.89411 -8.20370 -6.26822 0.16115 0.34968 0.74181 1.45867 1.48029 1.57814 1.73280 2.14618 2.43637 2.71591 2.85582 3.16852 3.50554 3.72853 3.81722 3.94612 4.06803 4.14100 4.20476 4.53539 4.71157 4.88353 4.93792 5.00133 5.18468 5.19482 5.33748 5.58386 5.80145 6.25649 6.44771 6.80976 7.05234 7.36169 8.96352 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036641 B = 0.006537 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.982407 B = 4282.056259 C = 4341.891115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.238 3.762 3 C 0.147 3.853 4 Cl -0.145 7.145 5 C -0.013 4.013 6 C -0.523 4.523 7 H 0.033 0.967 8 C 0.007 3.993 9 N -0.953 5.953 10 Si 0.941 3.059 11 H -0.272 1.272 12 H -0.294 1.294 13 H -0.218 1.218 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.078 4.078 17 C -0.174 4.174 18 C 0.087 3.913 19 N -0.510 5.510 20 C 0.109 3.891 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.264 0.736 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.179 0.821 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 9.152 16.055 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.080 4.080 3 C 0.118 3.882 4 Cl -0.119 7.119 5 C -0.051 4.051 6 C -0.561 4.561 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.594 5.594 10 Si 0.764 3.236 11 H -0.197 1.197 12 H -0.221 1.221 13 H -0.140 1.140 14 C -0.109 4.109 15 C -0.150 4.150 16 C -0.105 4.105 17 C -0.194 4.194 18 C -0.070 4.070 19 N -0.218 5.218 20 C -0.048 4.048 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.154 0.846 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.174 0.826 28 H 0.196 0.804 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.697 9.918 15.632 18.709 hybrid contribution -0.141 -1.449 -0.537 1.552 sum 2.557 8.469 15.096 17.497 Atomic orbital electron populations 1.81031 1.13545 1.09534 1.09184 1.28920 0.94956 0.91930 0.92158 1.21121 0.81178 0.93854 0.92057 1.98732 1.88371 1.60972 1.63810 1.20064 0.99746 0.88816 0.96442 1.21189 1.31597 1.02302 1.01044 0.94830 1.25956 0.97295 1.00140 0.95600 1.70082 1.47638 1.23628 1.18013 0.85805 0.79711 0.79021 0.79072 1.19742 1.22065 1.14014 1.21121 1.04050 0.94979 0.90722 1.20856 0.96847 0.96823 1.00496 1.21753 0.94346 0.99328 0.95024 1.22398 1.02197 0.92889 1.01881 1.23232 0.90409 0.99832 0.93477 1.67726 1.13116 1.29405 1.11593 1.22932 0.99833 0.86879 0.95151 0.90560 0.92414 0.92740 0.84596 0.85792 0.84755 0.82551 0.80424 0.81707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.16 18.54 20.01 0.37 -18.79 15 2 C 0.24 9.16 11.27 89.44 1.01 10.17 15 3 C 0.15 4.83 0.67 -12.60 -0.01 4.82 15 4 Cl -0.15 -5.11 25.74 -2.72 -0.07 -5.18 15 5 C -0.01 -0.47 3.15 29.85 0.09 -0.38 15 6 C -0.52 -27.15 8.48 25.60 0.22 -26.94 15 7 H 0.03 2.02 7.38 -2.91 -0.02 1.99 15 8 C 0.01 0.37 5.47 84.66 0.46 0.84 15 9 N -0.95 -58.09 13.96 21.45 0.30 -57.79 15 10 Si 0.94 39.38 27.47 68.60 1.88 41.27 15 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 12 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 13 H -0.22 -7.55 6.54 99.48 0.65 -6.90 15 14 C -0.07 -1.56 4.52 29.85 0.13 -1.42 15 15 C -0.15 -3.52 4.40 -19.77 -0.09 -3.60 15 16 C -0.08 -1.81 8.79 22.47 0.20 -1.62 15 17 C -0.17 -3.56 10.11 22.36 0.23 -3.33 15 18 C 0.09 1.86 11.18 84.69 0.95 2.81 15 19 N -0.51 -13.22 10.36 -195.84 -2.03 -15.25 15 20 C 0.11 2.68 9.88 84.67 0.84 3.51 15 21 H 0.08 2.58 7.20 -2.39 -0.02 2.56 15 22 H 0.06 2.01 7.57 -2.39 -0.02 1.99 15 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 24 H 0.14 2.26 8.09 -2.39 -0.02 2.24 15 25 H 0.12 2.17 8.10 -2.39 -0.02 2.15 15 26 H 0.13 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.16 2.32 8.06 -2.91 -0.02 2.30 15 28 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 29 H 0.17 3.63 7.92 -2.91 -0.02 3.60 15 Total: -1.00 -69.04 273.49 5.59 -63.45 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.11 Total: 7.42 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 4.03 Total: -15.14 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -1.36 Total: -91.82 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.88 Total: 41.27 kcal Atomic # 17 Polarization: -5.11 SS G_CDS: -0.07 Total: -5.18 kcal Total: -69.04 5.59 -63.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034188554.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.769 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds