Wall clock time and date at job start Mon Mar 30 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 Cl 1.80296 * 109.46914 * 327.34104 * 3 2 1 5 5 C 1.53000 * 109.46999 * 87.33774 * 3 2 1 6 6 C 1.50693 * 109.47250 * 305.00227 * 5 3 2 7 7 H 1.07999 * 120.00439 * 0.02562 * 6 5 3 8 8 C 1.37885 * 119.99917 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99854 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99968 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47204 * 90.00064 * 10 8 6 12 12 H 1.48498 * 109.47135 * 209.99973 * 10 8 6 13 13 H 1.48501 * 109.47054 * 330.00065 * 10 8 6 14 14 C 1.53001 * 109.46896 * 207.34054 * 3 2 1 15 15 C 1.50695 * 109.47293 * 60.00123 * 14 3 2 16 16 C 1.38678 * 120.41675 * 270.25216 * 15 14 3 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 14 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46940 * 65.00010 * 5 3 2 22 22 H 1.09000 * 109.46784 * 185.00196 * 5 3 2 23 23 H 0.97002 * 119.99633 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.46704 * 299.99900 * 14 3 2 25 25 H 1.08996 * 109.46675 * 179.97438 * 14 3 2 26 26 H 1.07994 * 120.78944 * 359.96926 * 16 15 14 27 27 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 28 28 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 29 29 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 17 3.2096 -1.4302 0.9173 5 6 3.1180 -0.0661 -1.4410 6 6 2.5177 -1.2635 -2.1313 7 1 1.8398 -1.9119 -1.5961 8 6 2.8338 -1.5314 -3.4465 9 7 3.6589 -0.7416 -4.0984 10 14 2.0902 -3.0161 -4.3021 11 1 0.8114 -2.6259 -4.9485 12 1 3.0336 -3.5169 -5.3337 13 1 1.8342 -4.0857 -3.3042 14 6 3.1174 1.2823 0.6625 15 6 2.6151 1.3480 2.0818 16 6 1.4018 1.9548 2.3697 17 6 0.9820 1.9964 3.6903 18 6 1.7785 1.4311 4.6684 19 7 2.9241 0.8573 4.3571 20 6 3.3548 0.7993 3.1119 21 1 2.8292 0.8415 -1.9710 22 1 4.2044 -0.1552 -1.4381 23 1 3.8810 -0.9299 -5.0237 24 1 2.7536 2.1472 0.1079 25 1 4.2074 1.2825 0.6629 26 1 0.8005 2.3886 1.5845 27 1 0.0447 2.4650 3.9515 28 1 1.4584 1.4590 5.6995 29 1 4.2988 0.3214 2.8954 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034188555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:06 Heat of formation + Delta-G solvation = 39.022596 kcal Electronic energy + Delta-G solvation = -15428.818679 eV Core-core repulsion = 12763.417881 eV Total energy + Delta-G solvation = -2665.400798 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17766 -37.33009 -35.23749 -34.10960 -33.17035 -31.99334 -30.80822 -27.38320 -24.49180 -23.51947 -22.12630 -21.77253 -17.43657 -16.97104 -16.56810 -16.00328 -15.26261 -14.75570 -14.40959 -13.88073 -13.39218 -13.26088 -13.02027 -12.79129 -12.33305 -12.15857 -11.76199 -11.49750 -11.32556 -11.17556 -10.84432 -10.63896 -10.32860 -10.11561 -9.80818 -9.58664 -9.43894 -9.28240 -8.86598 -8.53260 -6.17594 -4.20384 1.13826 1.32969 2.24542 3.26105 3.31663 3.33778 3.38821 3.68651 3.87129 4.24072 4.36535 4.47892 4.81264 4.86177 5.03377 5.06038 5.15889 5.22297 5.44223 5.59789 5.85709 5.93708 5.97129 6.14609 6.32862 6.74591 7.16081 7.23094 7.76620 8.01871 8.03976 8.05901 8.81455 9.45380 10.93262 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.006263 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.377965 B = 4469.346823 C = 4589.930725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.236 3.764 3 C 0.137 3.863 4 Cl -0.147 7.147 5 C 0.028 3.972 6 C -0.524 4.524 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.075 4.075 15 C -0.138 4.138 16 C -0.067 4.067 17 C -0.174 4.174 18 C 0.091 3.909 19 N -0.486 5.486 20 C 0.119 3.881 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.264 0.736 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.152 0.848 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 6.242 11.979 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.082 4.082 3 C 0.108 3.892 4 Cl -0.120 7.120 5 C -0.010 4.010 6 C -0.562 4.562 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.114 4.114 15 C -0.140 4.140 16 C -0.093 4.093 17 C -0.194 4.194 18 C -0.065 4.065 19 N -0.194 5.194 20 C -0.037 4.037 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.169 0.831 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.900 5.782 12.554 13.850 hybrid contribution -0.586 -0.608 -1.275 1.529 sum -1.485 5.174 11.279 12.497 Atomic orbital electron populations 1.81025 1.12510 1.07694 1.09643 1.28480 0.94388 0.93346 0.92002 1.21286 0.82429 0.86379 0.99086 1.98715 1.88619 1.47646 1.77037 1.19601 0.98594 0.99510 0.83265 1.21016 1.28107 1.10260 0.96804 0.92136 1.24880 0.94816 0.96613 0.97263 1.69920 1.34305 1.37670 1.10984 0.86576 0.79001 0.83052 0.79453 1.20637 1.20981 1.19613 1.21011 1.03235 0.96275 0.90895 1.20901 0.96124 0.99871 0.97100 1.21528 0.94833 0.96101 0.96867 1.22077 1.01404 1.02113 0.93796 1.22715 0.90331 0.93808 0.99690 1.67709 1.14901 1.15538 1.21281 1.22751 0.99398 0.94434 0.87163 0.93757 0.92815 0.92648 0.88309 0.87440 0.85219 0.85077 0.83100 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.10 18.54 42.15 0.78 -8.32 15 2 C 0.24 4.69 11.22 -20.76 -0.23 4.46 15 3 C 0.14 2.47 0.67 -93.40 -0.06 2.41 15 4 Cl -0.15 -2.66 25.72 -51.86 -1.33 -3.99 15 5 C 0.03 0.61 4.09 -27.89 -0.11 0.50 15 6 C -0.52 -13.49 7.98 -34.44 -0.27 -13.76 15 7 H 0.06 1.61 7.16 -52.49 -0.38 1.23 15 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 9 N -0.89 -24.53 13.29 55.43 0.74 -23.79 15 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 14 C -0.08 -1.04 4.52 -27.88 -0.13 -1.16 15 15 C -0.14 -1.88 4.42 -104.48 -0.46 -2.34 15 16 C -0.07 -0.88 8.89 -39.28 -0.35 -1.23 15 17 C -0.17 -2.03 10.11 -39.44 -0.40 -2.43 15 18 C 0.09 1.10 11.18 -17.54 -0.20 0.90 15 19 N -0.49 -6.84 10.36 -13.25 -0.14 -6.98 15 20 C 0.12 1.64 9.68 -17.55 -0.17 1.47 15 21 H 0.04 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 24 H 0.10 1.23 8.10 -51.93 -0.42 0.81 15 25 H 0.11 1.27 8.09 -51.93 -0.42 0.85 15 26 H 0.13 1.64 8.06 -52.49 -0.42 1.21 15 27 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 28 H 0.15 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.16 1.96 7.88 -52.49 -0.41 1.55 15 LS Contribution 276.98 15.07 4.17 4.17 Total: -1.00 -29.33 276.98 -6.16 -35.49 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.88 Total: -3.20 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.48 Total: -9.50 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.38 Total: -39.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.33 Total: -3.99 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.33 -6.16 -35.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034188555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.514 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds