Wall clock time and date at job start Mon Mar 30 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 Cl 1.80296 * 109.46914 * 327.34104 * 3 2 1 5 5 C 1.53000 * 109.46999 * 87.33774 * 3 2 1 6 6 C 1.50693 * 109.47250 * 305.00227 * 5 3 2 7 7 H 1.07999 * 120.00439 * 0.02562 * 6 5 3 8 8 C 1.37885 * 119.99917 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99854 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99968 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47204 * 90.00064 * 10 8 6 12 12 H 1.48498 * 109.47135 * 209.99973 * 10 8 6 13 13 H 1.48501 * 109.47054 * 330.00065 * 10 8 6 14 14 C 1.53001 * 109.46896 * 207.34054 * 3 2 1 15 15 C 1.50695 * 109.47293 * 60.00123 * 14 3 2 16 16 C 1.38678 * 120.41675 * 270.25216 * 15 14 3 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 14 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46940 * 65.00010 * 5 3 2 22 22 H 1.09000 * 109.46784 * 185.00196 * 5 3 2 23 23 H 0.97002 * 119.99633 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.46704 * 299.99900 * 14 3 2 25 25 H 1.08996 * 109.46675 * 179.97438 * 14 3 2 26 26 H 1.07994 * 120.78944 * 359.96926 * 16 15 14 27 27 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 28 28 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 29 29 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 17 3.2096 -1.4302 0.9173 5 6 3.1180 -0.0661 -1.4410 6 6 2.5177 -1.2635 -2.1313 7 1 1.8398 -1.9119 -1.5961 8 6 2.8338 -1.5314 -3.4465 9 7 3.6589 -0.7416 -4.0984 10 14 2.0902 -3.0161 -4.3021 11 1 0.8114 -2.6259 -4.9485 12 1 3.0336 -3.5169 -5.3337 13 1 1.8342 -4.0857 -3.3042 14 6 3.1174 1.2823 0.6625 15 6 2.6151 1.3480 2.0818 16 6 1.4018 1.9548 2.3697 17 6 0.9820 1.9964 3.6903 18 6 1.7785 1.4311 4.6684 19 7 2.9241 0.8573 4.3571 20 6 3.3548 0.7993 3.1119 21 1 2.8292 0.8415 -1.9710 22 1 4.2044 -0.1552 -1.4381 23 1 3.8810 -0.9299 -5.0237 24 1 2.7536 2.1472 0.1079 25 1 4.2074 1.2825 0.6629 26 1 0.8005 2.3886 1.5845 27 1 0.0447 2.4650 3.9515 28 1 1.4584 1.4590 5.6995 29 1 4.2988 0.3214 2.8954 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034188555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:06 Heat of formation + Delta-G solvation = 22.977698 kcal Electronic energy + Delta-G solvation = -15429.514438 eV Core-core repulsion = 12763.417881 eV Total energy + Delta-G solvation = -2666.096557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17580 -38.79497 -36.77074 -35.59477 -34.82906 -33.08605 -32.19772 -28.88686 -25.98964 -24.51157 -23.85502 -22.83890 -18.92165 -18.37403 -17.93857 -17.10971 -16.78621 -16.17102 -15.79891 -15.32068 -14.64311 -14.54065 -14.14989 -14.13400 -13.98593 -13.66007 -13.14884 -13.11582 -12.88717 -12.62358 -12.52349 -12.34590 -12.01945 -11.69666 -11.37178 -11.13549 -10.67403 -10.56479 -10.36252 -9.88003 -8.21168 -6.27047 0.17188 0.35170 0.75108 1.37918 1.41291 1.49861 1.73921 2.14778 2.40176 2.76240 2.87187 3.16315 3.51924 3.77044 3.85129 3.94655 4.07843 4.14382 4.30156 4.53877 4.72012 4.88791 4.95036 5.19497 5.32279 5.34764 5.42768 5.72797 5.80669 6.11344 6.45022 6.80721 7.05750 7.40322 8.89503 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.006263 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.377965 B = 4469.346823 C = 4589.930725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.242 3.758 3 C 0.143 3.857 4 Cl -0.146 7.146 5 C 0.033 3.967 6 C -0.530 4.530 7 H 0.048 0.952 8 C 0.022 3.978 9 N -0.916 5.916 10 Si 0.938 3.062 11 H -0.281 1.281 12 H -0.277 1.277 13 H -0.272 1.272 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.080 4.080 17 C -0.172 4.172 18 C 0.088 3.912 19 N -0.508 5.508 20 C 0.111 3.889 21 H 0.036 0.964 22 H 0.050 0.950 23 H 0.265 0.735 24 H 0.113 0.887 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 6.570 12.947 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.076 4.076 3 C 0.114 3.886 4 Cl -0.119 7.119 5 C -0.005 4.005 6 C -0.568 4.568 7 H 0.067 0.933 8 C -0.177 4.177 9 N -0.556 5.556 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.202 1.202 13 H -0.197 1.197 14 C -0.107 4.107 15 C -0.148 4.148 16 C -0.106 4.106 17 C -0.192 4.192 18 C -0.069 4.069 19 N -0.217 5.217 20 C -0.046 4.046 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.198 0.802 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.149 6.106 13.526 14.884 hybrid contribution -0.545 -0.706 -1.518 1.761 sum -1.694 5.400 12.007 13.274 Atomic orbital electron populations 1.81016 1.13256 1.08602 1.10334 1.28840 0.94811 0.92596 0.91323 1.21248 0.81354 0.88362 0.97628 1.98715 1.88480 1.47978 1.76753 1.19417 0.98132 0.97609 0.85305 1.21298 1.27498 1.11060 0.96971 0.93338 1.25496 0.95433 0.98679 0.98135 1.69983 1.35416 1.38897 1.11269 0.85848 0.78364 0.80684 0.78662 1.20741 1.20229 1.19714 1.21023 1.04485 0.94184 0.91036 1.20830 0.96589 1.00730 0.96681 1.21725 0.94791 0.96268 0.97786 1.22393 1.02257 1.01470 0.93061 1.23253 0.89605 0.92743 1.01249 1.67738 1.16031 1.16438 1.21453 1.22885 0.99816 0.94606 0.87277 0.94583 0.93144 0.92564 0.86883 0.85381 0.85065 0.82413 0.80224 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.85 18.54 20.01 0.37 -18.47 15 2 C 0.24 9.42 11.22 89.44 1.00 10.42 15 3 C 0.14 5.01 0.67 -12.60 -0.01 5.01 15 4 Cl -0.15 -5.13 25.72 -2.72 -0.07 -5.20 15 5 C 0.03 1.44 4.09 29.85 0.12 1.56 15 6 C -0.53 -27.13 7.98 25.60 0.20 -26.93 15 7 H 0.05 2.56 7.16 -2.91 -0.02 2.54 15 8 C 0.02 1.19 5.46 84.66 0.46 1.65 15 9 N -0.92 -50.26 13.29 21.45 0.28 -49.98 15 10 Si 0.94 43.02 29.54 68.60 2.03 45.04 15 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 14 C -0.07 -1.78 4.52 29.85 0.13 -1.65 15 15 C -0.15 -3.75 4.42 -19.77 -0.09 -3.83 15 16 C -0.08 -1.95 8.89 22.47 0.20 -1.75 15 17 C -0.17 -3.60 10.11 22.36 0.23 -3.37 15 18 C 0.09 1.90 11.18 84.69 0.95 2.85 15 19 N -0.51 -13.41 10.36 -195.83 -2.03 -15.44 15 20 C 0.11 2.87 9.68 84.67 0.82 3.69 15 21 H 0.04 1.62 8.14 -2.39 -0.02 1.61 15 22 H 0.05 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.27 13.90 8.31 -92.71 -0.77 13.13 15 24 H 0.11 2.61 8.10 -2.39 -0.02 2.59 15 25 H 0.13 2.77 8.09 -2.39 -0.02 2.75 15 26 H 0.13 3.11 8.06 -2.91 -0.02 3.09 15 27 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 28 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 29 H 0.16 3.86 7.88 -2.91 -0.02 3.83 15 Total: -1.00 -60.89 276.98 5.77 -55.13 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.16 Total: 1.27 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.02 Total: -12.35 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.37 Total: -83.89 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -5.13 SS G_CDS: -0.07 Total: -5.20 kcal Total: -60.89 5.77 -55.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034188555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.106 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds