Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33336 * 126.45437 * 2 1 4 4 C 1.30801 * 109.24994 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.15064 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46989 * 89.97509 * 5 4 3 7 7 C 1.33641 * 122.75097 * 124.73598 * 6 5 4 8 8 S 1.76201 * 107.92607 * 179.97438 * 7 6 5 9 9 C 1.70979 * 90.28116 * 0.27195 * 8 7 6 10 10 N 1.29031 * 110.16857 * 359.83960 * 9 8 7 11 11 O 1.34010 * 109.69510 * 359.74786 * 4 3 2 12 12 C 1.35478 * 107.71406 * 0.40333 * 11 4 3 13 13 C 1.39857 * 126.87043 * 179.87319 * 12 11 4 14 14 H 1.08001 * 119.99596 * 185.84097 * 13 12 11 15 15 C 1.40164 * 119.99967 * 5.84202 * 13 12 11 16 16 N 1.30801 * 119.99731 * 183.66296 * 15 13 12 17 17 Si 1.86796 * 120.00152 * 3.66797 * 15 13 12 18 18 H 1.48502 * 109.47079 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.47151 * 299.99916 * 17 15 13 20 20 H 1.48494 * 109.47236 * 59.99645 * 17 15 13 21 21 H 1.09008 * 109.47091 * 269.99849 * 1 2 3 22 22 H 1.08996 * 109.47575 * 30.00294 * 1 2 3 23 23 H 1.09001 * 109.46736 * 150.00648 * 1 2 3 24 24 H 1.08988 * 109.47248 * 209.97308 * 5 4 3 25 25 H 1.09005 * 109.46904 * 329.98057 * 5 4 3 26 26 H 1.08003 * 126.03186 * 0.03226 * 7 6 5 27 27 H 1.07998 * 124.91841 * 179.83828 * 9 8 7 28 28 H 0.96996 * 120.00257 * 354.80272 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2992 1.0725 0.0000 4 6 3.5487 0.6856 0.0006 5 6 4.7420 1.6060 0.0002 6 6 5.1390 1.9143 1.4209 7 6 6.3718 1.6994 1.8899 8 16 6.4027 2.1940 3.5808 9 6 4.7527 2.6331 3.4912 10 7 4.2973 2.4120 2.3043 11 8 3.6070 -0.6532 0.0065 12 6 2.3356 -1.1212 0.0007 13 6 1.9345 -2.4610 0.0013 14 1 0.8888 -2.7116 -0.0989 15 6 2.8897 -3.4784 0.1321 16 7 2.5237 -4.7321 0.0609 17 14 4.6853 -3.0439 0.4082 18 1 5.4859 -4.2903 0.5121 19 1 5.1794 -2.2324 -0.7332 20 1 4.8182 -2.2634 1.6645 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5137 24 1 5.5734 1.1228 -0.5126 25 1 4.4863 2.5322 -0.5147 26 1 7.2027 1.2949 1.3309 27 1 4.1751 3.0370 4.3095 28 1 1.5832 -4.9597 -0.0067 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074079866.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = 36.881373 kcal Electronic energy + Delta-G solvation = -15695.153834 eV Core-core repulsion = 13031.703892 eV Total energy + Delta-G solvation = -2663.449942 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35175 -39.52399 -34.09921 -33.49385 -32.48685 -30.24005 -27.83089 -27.51133 -24.78382 -22.95041 -20.73588 -19.51460 -19.34323 -18.33692 -17.75679 -15.71853 -15.42711 -15.02884 -14.45621 -13.95564 -13.70464 -13.20477 -13.11999 -13.07068 -12.34905 -12.18813 -12.09517 -11.61890 -11.23736 -11.13904 -10.92591 -10.06009 -9.86223 -9.54975 -9.44227 -9.38968 -9.29834 -8.94964 -8.67841 -7.64025 -7.45112 -4.66317 0.88538 1.54865 1.85349 2.78557 3.03142 3.13967 3.40188 3.42974 3.93849 4.06134 4.40518 4.54728 4.94242 5.27591 5.36068 5.43113 5.54218 5.91578 6.09025 6.25592 6.28721 6.61071 6.65740 6.80842 7.09004 7.25454 7.38552 7.89797 7.99314 8.06149 8.15421 8.39985 9.47253 9.80327 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.008229 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.154062 B = 3401.869105 C = 4150.587115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.201 4.201 3 N -0.415 5.415 4 C 0.029 3.971 5 C 0.077 3.923 6 C 0.080 3.920 7 C -0.254 4.254 8 S 0.084 5.916 9 C 0.024 3.976 10 N -0.442 5.442 11 O -0.238 6.238 12 C 0.157 3.843 13 C -0.474 4.474 14 H 0.104 0.896 15 C 0.043 3.957 16 N -0.801 5.801 17 Si 1.072 2.928 18 H -0.282 1.282 19 H -0.262 1.262 20 H -0.272 1.272 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.178 0.822 27 H 0.196 0.804 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.033 9.002 4.540 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.327 4.327 3 N -0.142 5.142 4 C -0.170 4.170 5 C 0.036 3.964 6 C -0.052 4.052 7 C -0.393 4.393 8 S 0.336 5.664 9 C -0.275 4.275 10 N -0.154 5.154 11 O -0.131 6.131 12 C 0.104 3.896 13 C -0.503 4.503 14 H 0.122 0.878 15 C -0.179 4.179 16 N -0.425 5.425 17 Si 0.898 3.102 18 H -0.209 1.209 19 H -0.188 1.188 20 H -0.198 1.198 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.195 0.805 27 H 0.213 0.787 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.518 9.088 5.370 14.213 hybrid contribution -1.834 -0.436 -0.806 2.050 sum 7.684 8.652 4.564 12.439 Atomic orbital electron populations 1.19406 0.89155 1.00005 0.99522 1.21192 0.95677 0.87289 1.28554 1.69244 1.00381 1.32565 1.12046 1.23973 0.93506 0.79274 1.20294 1.18021 0.92557 0.96701 0.89124 1.20444 0.88318 0.98616 0.97856 1.26838 1.02717 1.12274 0.97440 1.83808 1.13497 1.59010 1.10102 1.28454 0.95950 1.04467 0.98632 1.66119 1.35423 1.13196 1.00683 1.84186 1.30429 1.22719 1.75791 1.20567 0.79619 0.95166 0.94285 1.19837 0.97666 0.87272 1.45507 0.87775 1.27400 1.08124 0.92237 0.90118 1.70561 1.21803 1.18806 1.31300 0.83383 0.71964 0.75173 0.79697 1.20885 1.18783 1.19764 0.94243 0.93543 0.93089 0.89073 0.87798 0.80474 0.78695 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.52 10.24 36.00 0.37 -0.15 15 2 C -0.20 -5.30 7.27 -81.50 -0.59 -5.89 15 3 N -0.42 -10.74 11.23 -6.32 -0.07 -10.81 15 4 C 0.03 0.70 7.42 -12.72 -0.09 0.61 15 5 C 0.08 1.41 6.34 -29.03 -0.18 1.22 15 6 C 0.08 1.41 6.07 -84.22 -0.51 0.90 15 7 C -0.25 -3.64 11.07 29.12 0.32 -3.32 15 8 S 0.08 1.03 23.22 -107.50 -2.50 -1.47 15 9 C 0.02 0.35 12.23 51.59 0.63 0.98 15 10 N -0.44 -8.19 10.39 -11.89 -0.12 -8.31 15 11 O -0.24 -6.26 6.31 3.13 0.02 -6.24 15 12 C 0.16 4.31 6.53 -38.54 -0.25 4.06 15 13 C -0.47 -12.91 9.54 -38.25 -0.36 -13.27 15 14 H 0.10 2.81 7.51 -52.49 -0.39 2.42 15 15 C 0.04 1.13 5.52 -17.27 -0.10 1.03 15 16 N -0.80 -21.13 13.65 55.56 0.76 -20.37 15 17 Si 1.07 25.04 25.97 -169.99 -4.41 20.63 15 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 19 H -0.26 -5.98 6.82 56.52 0.39 -5.60 15 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 21 H 0.04 0.83 8.14 -51.92 -0.42 0.41 15 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.05 1.08 7.56 -51.93 -0.39 0.69 15 24 H 0.09 1.40 8.03 -51.94 -0.42 0.98 15 25 H 0.10 1.73 8.14 -51.93 -0.42 1.31 15 26 H 0.18 2.02 8.06 -52.48 -0.42 1.60 15 27 H 0.20 2.09 8.06 -52.49 -0.42 1.66 15 28 H 0.29 7.29 8.73 -40.82 -0.36 6.93 15 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -31.75 266.39 -5.57 -37.32 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.49 Total: -0.93 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.77 Total: -13.84 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.56 Total: -39.49 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: 0.02 Total: -6.24 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.41 Total: 20.63 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.75 -5.57 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079866.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.205 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds