Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33336 * 126.45437 * 2 1 4 4 C 1.30801 * 109.24994 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.15064 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46989 * 89.97509 * 5 4 3 7 7 C 1.33641 * 122.75097 * 124.73598 * 6 5 4 8 8 S 1.76201 * 107.92607 * 179.97438 * 7 6 5 9 9 C 1.70979 * 90.28116 * 0.27195 * 8 7 6 10 10 N 1.29031 * 110.16857 * 359.83960 * 9 8 7 11 11 O 1.34010 * 109.69510 * 359.74786 * 4 3 2 12 12 C 1.35478 * 107.71406 * 0.40333 * 11 4 3 13 13 C 1.39857 * 126.87043 * 179.87319 * 12 11 4 14 14 H 1.08001 * 119.99596 * 185.84097 * 13 12 11 15 15 C 1.40164 * 119.99967 * 5.84202 * 13 12 11 16 16 N 1.30801 * 119.99731 * 183.66296 * 15 13 12 17 17 Si 1.86796 * 120.00152 * 3.66797 * 15 13 12 18 18 H 1.48502 * 109.47079 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.47151 * 299.99916 * 17 15 13 20 20 H 1.48494 * 109.47236 * 59.99645 * 17 15 13 21 21 H 1.09008 * 109.47091 * 269.99849 * 1 2 3 22 22 H 1.08996 * 109.47575 * 30.00294 * 1 2 3 23 23 H 1.09001 * 109.46736 * 150.00648 * 1 2 3 24 24 H 1.08988 * 109.47248 * 209.97308 * 5 4 3 25 25 H 1.09005 * 109.46904 * 329.98057 * 5 4 3 26 26 H 1.08003 * 126.03186 * 0.03226 * 7 6 5 27 27 H 1.07998 * 124.91841 * 179.83828 * 9 8 7 28 28 H 0.96996 * 120.00257 * 354.80272 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2992 1.0725 0.0000 4 6 3.5487 0.6856 0.0006 5 6 4.7420 1.6060 0.0002 6 6 5.1390 1.9143 1.4209 7 6 6.3718 1.6994 1.8899 8 16 6.4027 2.1940 3.5808 9 6 4.7527 2.6331 3.4912 10 7 4.2973 2.4120 2.3043 11 8 3.6070 -0.6532 0.0065 12 6 2.3356 -1.1212 0.0007 13 6 1.9345 -2.4610 0.0013 14 1 0.8888 -2.7116 -0.0989 15 6 2.8897 -3.4784 0.1321 16 7 2.5237 -4.7321 0.0609 17 14 4.6853 -3.0439 0.4082 18 1 5.4859 -4.2903 0.5121 19 1 5.1794 -2.2324 -0.7332 20 1 4.8182 -2.2634 1.6645 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5137 24 1 5.5734 1.1228 -0.5126 25 1 4.4863 2.5322 -0.5147 26 1 7.2027 1.2949 1.3309 27 1 4.1751 3.0370 4.3095 28 1 1.5832 -4.9597 -0.0067 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074079866.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = 13.467091 kcal Electronic energy + Delta-G solvation = -15696.169153 eV Core-core repulsion = 13031.703892 eV Total energy + Delta-G solvation = -2664.465261 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.32758 -40.70332 -36.06775 -35.47315 -33.98459 -31.90637 -29.46047 -29.19890 -25.97905 -24.79296 -22.59954 -21.45312 -20.56590 -20.30031 -18.96634 -17.37613 -17.11615 -16.55502 -16.02592 -15.78749 -15.34181 -15.02527 -14.44931 -14.15107 -14.08429 -13.93342 -13.63052 -13.28828 -13.01947 -12.89022 -12.31812 -12.00862 -11.73274 -11.48869 -11.36326 -10.91664 -10.51573 -10.38430 -9.77523 -9.65346 -9.47029 -6.69052 -0.19300 0.52785 0.74303 0.88111 1.26710 1.53495 1.57159 1.82515 2.07712 2.16005 2.65347 2.89950 3.37188 3.73338 4.14833 4.20986 4.41751 4.45509 4.58655 4.68749 4.83511 4.87568 4.95738 5.11908 5.21070 5.23040 5.42058 5.89054 6.07708 6.16790 6.39448 6.88330 7.49569 7.78681 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.008229 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.154062 B = 3401.869105 C = 4150.587115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.222 4.222 3 N -0.442 5.442 4 C 0.050 3.950 5 C 0.072 3.928 6 C 0.044 3.956 7 C -0.252 4.252 8 S 0.164 5.836 9 C 0.008 3.992 10 N -0.498 5.498 11 O -0.244 6.244 12 C 0.128 3.872 13 C -0.498 4.498 14 H 0.092 0.908 15 C 0.015 3.985 16 N -0.815 5.815 17 Si 1.100 2.900 18 H -0.261 1.261 19 H -0.255 1.255 20 H -0.279 1.279 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.207 0.793 27 H 0.221 0.779 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.363 10.060 5.380 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.346 4.346 3 N -0.170 5.170 4 C -0.152 4.152 5 C 0.032 3.968 6 C -0.088 4.088 7 C -0.391 4.391 8 S 0.417 5.583 9 C -0.290 4.290 10 N -0.212 5.212 11 O -0.138 6.138 12 C 0.075 3.925 13 C -0.527 4.527 14 H 0.110 0.890 15 C -0.202 4.202 16 N -0.439 5.439 17 Si 0.922 3.078 18 H -0.187 1.187 19 H -0.180 1.180 20 H -0.205 1.205 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.224 0.776 27 H 0.237 0.763 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.810 10.128 6.214 16.753 hybrid contribution -2.466 -0.573 -0.976 2.713 sum 9.345 9.555 5.238 14.354 Atomic orbital electron populations 1.19449 0.87174 1.00894 1.00242 1.21833 0.97407 0.87298 1.28019 1.69328 1.01208 1.32460 1.13975 1.25409 0.95005 0.79125 1.15658 1.18363 0.91275 0.96106 0.91088 1.20284 0.89743 1.01416 0.97402 1.27274 1.02412 1.10263 0.99198 1.83547 1.10658 1.56664 1.07475 1.28910 0.97919 1.03918 0.98216 1.66095 1.37426 1.15283 1.02373 1.84202 1.30168 1.23863 1.75535 1.20711 0.80266 0.95508 0.96019 1.19813 0.97465 0.87960 1.47502 0.89037 1.28262 1.10459 0.91930 0.89588 1.70591 1.21812 1.18916 1.32602 0.83066 0.69543 0.75810 0.79389 1.18676 1.18012 1.20497 0.93530 0.92015 0.92749 0.85995 0.86677 0.77634 0.76262 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.90 10.24 71.23 0.73 -0.17 15 2 C -0.22 -11.78 7.27 42.61 0.31 -11.47 15 3 N -0.44 -22.82 11.23 -288.42 -3.24 -26.06 15 4 C 0.05 2.37 7.42 88.26 0.66 3.02 15 5 C 0.07 2.50 6.34 29.10 0.18 2.68 15 6 C 0.04 1.44 6.07 41.52 0.25 1.70 15 7 C -0.25 -6.33 11.07 66.78 0.74 -5.59 15 8 S 0.16 3.39 23.22 -56.49 -1.31 2.08 15 9 C 0.01 0.21 12.23 130.65 1.60 1.81 15 10 N -0.50 -17.74 10.39 -191.54 -1.99 -19.73 15 11 O -0.24 -12.71 6.31 -11.73 -0.07 -12.78 15 12 C 0.13 7.10 6.53 22.95 0.15 7.25 15 13 C -0.50 -27.78 9.54 23.13 0.22 -27.56 15 14 H 0.09 5.15 7.51 -2.91 -0.02 5.13 15 15 C 0.02 0.81 5.52 85.31 0.47 1.28 15 16 N -0.82 -43.35 13.65 21.87 0.30 -43.06 15 17 Si 1.10 49.69 25.97 68.60 1.78 51.47 15 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 19 H -0.25 -11.09 6.82 99.48 0.68 -10.41 15 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 21 H 0.05 1.98 8.14 -2.38 -0.02 1.96 15 22 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.05 2.34 7.56 -2.39 -0.02 2.33 15 24 H 0.12 3.37 8.03 -2.39 -0.02 3.35 15 25 H 0.12 3.64 8.14 -2.38 -0.02 3.63 15 26 H 0.21 3.74 8.06 -2.91 -0.02 3.71 15 27 H 0.22 4.18 8.06 -2.91 -0.02 4.16 15 28 H 0.29 14.82 8.73 -92.71 -0.81 14.02 15 Total: -1.00 -68.82 266.39 1.89 -66.92 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.12 Total: 8.19 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 5.31 Total: -27.04 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -4.93 Total: -88.84 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.07 Total: -12.78 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 1.78 Total: 51.47 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -68.82 1.89 -66.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079866.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.392 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds