Wall clock time and date at job start Mon Mar 30 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29026 * 124.91858 * 2 1 4 4 C 1.31775 * 117.12264 * 180.22866 * 3 2 1 5 5 C 1.50699 * 122.75210 * 179.75142 * 4 3 2 6 6 C 1.50699 * 109.46902 * 304.71237 * 5 4 3 7 7 C 1.35943 * 126.32273 * 90.00002 * 6 5 4 8 8 N 1.33057 * 107.97972 * 180.26484 * 7 6 5 9 9 C 1.32815 * 108.65433 * 359.59698 * 8 7 6 10 10 C 1.39800 * 125.80256 * 180.15901 * 9 8 7 11 11 H 1.07995 * 120.00010 * 180.28775 * 10 9 8 12 12 C 1.40335 * 120.00023 * 0.28338 * 10 9 8 13 13 N 1.30630 * 120.00026 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00211 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46953 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47325 * 120.00029 * 14 12 10 17 17 H 1.48505 * 109.47058 * 240.00261 * 14 12 10 18 18 O 1.34598 * 126.32045 * 270.02091 * 6 5 4 19 19 C 1.33638 * 114.50536 * 359.48375 * 4 3 2 20 20 S 1.70985 * 124.91251 * 179.69660 * 2 1 3 21 21 H 1.09009 * 109.47483 * 180.28268 * 1 2 3 22 22 H 1.09006 * 109.47149 * 300.27928 * 1 2 3 23 23 H 1.08997 * 109.47691 * 60.27839 * 1 2 3 24 24 H 1.08997 * 109.48076 * 184.70769 * 5 4 3 25 25 H 1.09004 * 109.47331 * 64.70792 * 5 4 3 26 26 H 1.08002 * 126.00542 * 359.97438 * 7 6 5 27 27 H 0.97001 * 120.00414 * 179.97438 * 13 12 10 28 28 H 1.08004 * 126.04431 * 180.27193 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8792 -0.0047 5 6 4.5307 2.0243 -0.0108 6 6 4.2379 2.9296 -1.1794 7 6 3.3998 3.9999 -1.1787 8 7 3.4106 4.5309 -2.3987 9 6 4.2397 3.8271 -3.1610 10 6 4.5234 4.0760 -4.5071 11 1 5.2125 3.4381 -5.0406 12 6 3.9128 5.1546 -5.1651 13 7 3.0796 5.9264 -4.5196 14 14 4.2912 5.4868 -6.9639 15 1 5.2593 4.4763 -7.4608 16 1 3.0384 5.4045 -7.7568 17 1 4.8775 6.8440 -7.1039 18 8 4.7578 2.8275 -2.4168 19 6 3.9354 -0.4007 0.0021 20 16 2.4856 -1.4021 0.0074 21 1 -0.3634 -1.0277 0.0051 22 1 -0.3634 0.5182 0.8875 23 1 -0.3634 0.5095 -0.8924 24 1 5.5449 1.6346 -0.0982 25 1 4.4369 2.5878 0.9176 26 1 2.8227 4.3538 -0.3372 27 1 2.6577 6.6722 -4.9743 28 1 4.9545 -0.7582 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074079873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:43 Heat of formation + Delta-G solvation = 52.058541 kcal Electronic energy + Delta-G solvation = -15277.702488 eV Core-core repulsion = 12614.910678 eV Total energy + Delta-G solvation = -2662.791810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91780 -39.51434 -33.87577 -33.12668 -32.28903 -30.34178 -28.34573 -27.39468 -24.27591 -22.50347 -20.78116 -19.85283 -19.36651 -17.33875 -17.24499 -15.48107 -15.22411 -14.93362 -14.39725 -14.26794 -13.51230 -13.33003 -13.17083 -12.79603 -12.43778 -12.10637 -12.01703 -11.53126 -11.40563 -11.28229 -10.87845 -10.54178 -10.28241 -9.61783 -9.33758 -9.16461 -9.07196 -8.47803 -8.04592 -7.23389 -6.62474 -4.54042 0.94512 1.57366 1.91215 2.90317 3.07519 3.08901 3.14058 3.40538 3.89178 4.28566 4.50696 4.74074 5.15229 5.39824 5.42240 5.46250 5.51290 5.65321 5.90279 6.00442 6.07283 6.32522 6.41340 6.66090 6.96452 7.17467 7.81690 8.02866 8.11582 8.23474 8.60512 8.85748 10.07771 10.31458 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.005261 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.434220 B = 5320.947440 C = 5428.343091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.051 3.949 3 N -0.452 5.452 4 C 0.091 3.909 5 C 0.069 3.931 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.539 5.539 9 C 0.332 3.668 10 C -0.437 4.437 11 H 0.090 0.910 12 C 0.076 3.924 13 N -0.727 5.727 14 Si 0.925 3.075 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.271 1.271 18 O -0.247 6.247 19 C -0.264 4.264 20 S 0.078 5.922 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.277 0.723 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -10.790 7.019 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.228 4.228 3 N -0.166 5.166 4 C -0.040 4.040 5 C 0.029 3.971 6 C -0.260 4.260 7 C -0.123 4.123 8 N -0.269 5.269 9 C 0.148 3.852 10 C -0.472 4.472 11 H 0.108 0.892 12 C -0.149 4.149 13 N -0.351 5.351 14 Si 0.749 3.251 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.196 1.196 18 O -0.144 6.144 19 C -0.403 4.403 20 S 0.331 5.669 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.160 0.840 27 H 0.088 0.912 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.955 -10.667 6.786 12.983 hybrid contribution 1.080 0.204 -0.518 1.215 sum -1.876 -10.463 6.267 12.340 Atomic orbital electron populations 1.20398 0.85469 1.03014 1.04542 1.27067 1.01652 0.90552 1.03501 1.66017 1.04749 1.30963 1.14894 1.20539 0.90323 0.94262 0.98875 1.18046 0.94680 0.90118 0.94286 1.21873 1.11764 1.05855 0.86538 1.22872 0.98126 0.94367 0.96983 1.71456 1.24475 1.30403 1.00564 1.22295 0.88519 0.81301 0.93056 1.18152 1.25965 1.12841 0.90288 0.89180 1.25849 0.93779 0.94680 1.00628 1.70018 1.17593 1.10753 1.36768 0.85991 0.79246 0.79166 0.80729 1.18303 1.19684 1.19645 1.84351 1.60301 1.49380 1.20326 1.26725 1.02564 0.95476 1.15487 1.83681 0.99031 1.13963 1.70185 0.90597 0.89545 0.89353 0.90314 0.89096 0.83954 0.91164 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.47 36.00 0.38 -0.46 15 2 C 0.05 0.79 7.39 -13.46 -0.10 0.69 15 3 N -0.45 -8.55 10.39 -8.06 -0.08 -8.64 15 4 C 0.09 1.66 6.06 -84.23 -0.51 1.15 15 5 C 0.07 1.29 6.26 -29.04 -0.18 1.11 15 6 C -0.21 -5.09 6.55 -35.13 -0.23 -5.32 15 7 C 0.02 0.61 11.81 -17.84 -0.21 0.40 15 8 N -0.54 -16.29 9.43 -13.42 -0.13 -16.42 15 9 C 0.33 9.98 7.74 -16.54 -0.13 9.85 15 10 C -0.44 -12.47 9.45 -38.21 -0.36 -12.83 15 11 H 0.09 2.39 7.85 -52.49 -0.41 1.98 15 12 C 0.08 2.01 5.50 -17.27 -0.10 1.91 15 13 N -0.73 -20.34 11.88 55.57 0.66 -19.68 15 14 Si 0.93 19.11 29.56 -169.99 -5.03 14.09 15 15 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 16 H -0.27 -5.48 7.11 56.52 0.40 -5.07 15 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 18 O -0.25 -6.95 10.82 3.08 0.03 -6.91 15 19 C -0.26 -4.01 11.07 29.12 0.32 -3.69 15 20 S 0.08 1.03 23.17 -107.50 -2.49 -1.46 15 21 H 0.08 0.64 8.13 -51.92 -0.42 0.22 15 22 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.08 1.30 8.03 -51.93 -0.42 0.88 15 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.14 3.38 8.06 -52.49 -0.42 2.95 15 27 H 0.28 6.92 8.29 -40.82 -0.34 6.58 15 28 H 0.17 2.16 8.06 -52.48 -0.42 1.74 15 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -33.96 271.73 -6.55 -40.52 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.50 Total: 1.59 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.12 Total: -7.18 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.45 Total: -44.73 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.03 Total: -6.91 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.96 -6.55 -40.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.577 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds