Wall clock time and date at job start Mon Mar 30 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29026 * 124.91858 * 2 1 4 4 C 1.31775 * 117.12264 * 180.22866 * 3 2 1 5 5 C 1.50699 * 122.75210 * 179.75142 * 4 3 2 6 6 C 1.50699 * 109.46902 * 304.71237 * 5 4 3 7 7 C 1.35943 * 126.32273 * 90.00002 * 6 5 4 8 8 N 1.33057 * 107.97972 * 180.26484 * 7 6 5 9 9 C 1.32815 * 108.65433 * 359.59698 * 8 7 6 10 10 C 1.39800 * 125.80256 * 180.15901 * 9 8 7 11 11 H 1.07995 * 120.00010 * 180.28775 * 10 9 8 12 12 C 1.40335 * 120.00023 * 0.28338 * 10 9 8 13 13 N 1.30630 * 120.00026 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00211 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46953 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47325 * 120.00029 * 14 12 10 17 17 H 1.48505 * 109.47058 * 240.00261 * 14 12 10 18 18 O 1.34598 * 126.32045 * 270.02091 * 6 5 4 19 19 C 1.33638 * 114.50536 * 359.48375 * 4 3 2 20 20 S 1.70985 * 124.91251 * 179.69660 * 2 1 3 21 21 H 1.09009 * 109.47483 * 180.28268 * 1 2 3 22 22 H 1.09006 * 109.47149 * 300.27928 * 1 2 3 23 23 H 1.08997 * 109.47691 * 60.27839 * 1 2 3 24 24 H 1.08997 * 109.48076 * 184.70769 * 5 4 3 25 25 H 1.09004 * 109.47331 * 64.70792 * 5 4 3 26 26 H 1.08002 * 126.00542 * 359.97438 * 7 6 5 27 27 H 0.97001 * 120.00414 * 179.97438 * 13 12 10 28 28 H 1.08004 * 126.04431 * 180.27193 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8792 -0.0047 5 6 4.5307 2.0243 -0.0108 6 6 4.2379 2.9296 -1.1794 7 6 3.3998 3.9999 -1.1787 8 7 3.4106 4.5309 -2.3987 9 6 4.2397 3.8271 -3.1610 10 6 4.5234 4.0760 -4.5071 11 1 5.2125 3.4381 -5.0406 12 6 3.9128 5.1546 -5.1651 13 7 3.0796 5.9264 -4.5196 14 14 4.2912 5.4868 -6.9639 15 1 5.2593 4.4763 -7.4608 16 1 3.0384 5.4045 -7.7568 17 1 4.8775 6.8440 -7.1039 18 8 4.7578 2.8275 -2.4168 19 6 3.9354 -0.4007 0.0021 20 16 2.4856 -1.4021 0.0074 21 1 -0.3634 -1.0277 0.0051 22 1 -0.3634 0.5182 0.8875 23 1 -0.3634 0.5095 -0.8924 24 1 5.5449 1.6346 -0.0982 25 1 4.4369 2.5878 0.9176 26 1 2.8227 4.3538 -0.3372 27 1 2.6577 6.6722 -4.9743 28 1 4.9545 -0.7582 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074079873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:43 Heat of formation + Delta-G solvation = 27.207666 kcal Electronic energy + Delta-G solvation = -15278.780103 eV Core-core repulsion = 12614.910678 eV Total energy + Delta-G solvation = -2663.869425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.00899 -40.77464 -35.88025 -34.60610 -34.28854 -31.86794 -29.95249 -28.88566 -26.09872 -23.80137 -22.90768 -21.72989 -20.63894 -19.41099 -18.54253 -17.50023 -16.86037 -16.31841 -16.02404 -15.88229 -15.01405 -14.81549 -14.61426 -14.26530 -13.94013 -13.47886 -13.10720 -13.08104 -13.00863 -12.92412 -12.67178 -12.25677 -11.94977 -11.64991 -11.12291 -10.53392 -10.32096 -10.20825 -9.63437 -9.29542 -8.60528 -6.66225 -0.22213 0.47113 0.72490 1.10798 1.39080 1.55816 1.58978 1.84466 2.16787 2.47025 2.80741 3.22272 3.29739 4.03584 4.22722 4.29574 4.37721 4.48108 4.52725 4.63692 4.66573 4.88882 4.94639 5.00612 5.14903 5.24780 5.81210 5.98049 6.16344 6.52239 6.73271 6.90383 7.96794 8.36442 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.005261 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.434220 B = 5320.947440 C = 5428.343091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.029 3.971 3 N -0.502 5.502 4 C 0.056 3.944 5 C 0.070 3.930 6 C -0.181 4.181 7 C -0.014 4.014 8 N -0.576 5.576 9 C 0.295 3.705 10 C -0.470 4.470 11 H 0.099 0.901 12 C 0.028 3.972 13 N -0.772 5.772 14 Si 1.015 2.985 15 H -0.250 1.250 16 H -0.261 1.261 17 H -0.259 1.259 18 O -0.261 6.261 19 C -0.264 4.264 20 S 0.155 5.845 21 H 0.108 0.892 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.159 0.841 27 H 0.288 0.712 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 -12.653 6.645 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.249 4.249 3 N -0.218 5.218 4 C -0.075 4.075 5 C 0.030 3.970 6 C -0.235 4.235 7 C -0.157 4.157 8 N -0.308 5.308 9 C 0.111 3.889 10 C -0.505 4.505 11 H 0.117 0.883 12 C -0.193 4.193 13 N -0.397 5.397 14 Si 0.832 3.168 15 H -0.173 1.173 16 H -0.185 1.185 17 H -0.183 1.183 18 O -0.158 6.158 19 C -0.403 4.403 20 S 0.409 5.591 21 H 0.127 0.873 22 H 0.114 0.886 23 H 0.096 0.904 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.176 0.824 27 H 0.098 0.902 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.711 -12.556 6.468 14.382 hybrid contribution 0.964 0.620 -0.237 1.170 sum -1.747 -11.937 6.232 13.578 Atomic orbital electron populations 1.20562 0.83304 1.05146 1.04450 1.27687 1.03326 0.91187 1.02679 1.66007 1.05503 1.33339 1.16958 1.20379 0.90259 0.94909 1.01982 1.18259 0.96446 0.90115 0.92185 1.22908 1.08855 1.05278 0.86484 1.23168 1.00036 0.95824 0.96714 1.71349 1.25555 1.31715 1.02146 1.22833 0.89725 0.82250 0.94135 1.18690 1.27179 1.14360 0.90312 0.88335 1.27084 0.92730 0.93359 1.06124 1.70113 1.18567 1.11492 1.39549 0.84699 0.79502 0.79496 0.73063 1.17270 1.18547 1.18338 1.84351 1.60622 1.49217 1.21604 1.27127 1.04948 0.95186 1.13025 1.83369 0.96408 1.11208 1.68083 0.87348 0.88584 0.90431 0.87942 0.87249 0.82390 0.90177 0.78265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.47 71.23 0.75 -0.83 15 2 C 0.03 0.85 7.39 88.52 0.65 1.51 15 3 N -0.50 -18.81 10.39 -179.41 -1.86 -20.67 15 4 C 0.06 1.98 6.06 41.52 0.25 2.23 15 5 C 0.07 2.56 6.26 29.10 0.18 2.74 15 6 C -0.18 -9.11 6.55 25.15 0.16 -8.95 15 7 C -0.01 -0.76 11.81 83.97 0.99 0.24 15 8 N -0.58 -36.33 9.43 -309.36 -2.92 -39.24 15 9 C 0.29 18.42 7.74 84.92 0.66 19.07 15 10 C -0.47 -27.56 9.45 23.16 0.22 -27.34 15 11 H 0.10 5.35 7.85 -2.91 -0.02 5.32 15 12 C 0.03 1.49 5.50 85.38 0.47 1.96 15 13 N -0.77 -44.36 11.88 21.89 0.26 -44.10 15 14 Si 1.02 39.01 29.56 68.60 2.03 41.04 15 15 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 17 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 18 O -0.26 -15.09 10.82 -11.89 -0.13 -15.22 15 19 C -0.26 -7.35 11.07 66.78 0.74 -6.61 15 20 S 0.15 3.62 23.17 -56.49 -1.31 2.31 15 21 H 0.11 1.51 8.13 -2.38 -0.02 1.49 15 22 H 0.10 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.08 1.81 8.14 -2.39 -0.02 1.80 15 24 H 0.10 3.21 8.03 -2.39 -0.02 3.19 15 25 H 0.11 3.53 8.14 -2.38 -0.02 3.51 15 26 H 0.16 7.81 8.06 -2.91 -0.02 7.78 15 27 H 0.29 14.62 8.29 -92.71 -0.77 13.85 15 28 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -77.05 271.73 2.33 -74.72 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.19 Total: 17.15 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 5.08 Total: -15.99 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.52 Total: -104.01 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.13 Total: -15.22 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.31 Total: 2.31 kcal Total: -77.05 2.33 -74.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.930 kcal (2) G-P(sol) polarization free energy of solvation -77.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds