Wall clock time and date at job start Mon Mar 30 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47478 * 2 1 4 4 C 1.31477 * 121.88346 * 88.93082 * 3 2 1 5 5 S 1.75781 * 109.66556 * 180.02562 * 4 3 2 6 6 C 1.76380 * 90.69103 * 359.77887 * 5 4 3 7 7 N 1.33535 * 141.35885 * 180.02562 * 6 5 4 8 8 C 1.31987 * 109.90603 * 179.97438 * 7 6 5 9 9 C 1.38932 * 107.93683 * 359.97438 * 8 7 6 10 10 C 1.46215 * 126.86840 * 180.02562 * 9 8 7 11 11 O 1.22250 * 120.00232 * 185.98488 * 10 9 8 12 12 C 1.40795 * 119.99858 * 5.98344 * 10 9 8 13 13 H 1.08008 * 120.00347 * 0.02562 * 12 10 9 14 14 C 1.40324 * 120.00005 * 179.97438 * 12 10 9 15 15 N 1.30542 * 120.00020 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99949 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47201 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47301 * 120.00264 * 16 14 12 19 19 H 1.48507 * 109.47108 * 240.00362 * 16 14 12 20 20 N 1.34798 * 109.19827 * 359.97438 * 6 5 4 21 21 H 1.09000 * 109.47105 * 300.00069 * 1 2 3 22 22 H 1.08998 * 109.46991 * 60.00355 * 1 2 3 23 23 H 1.09004 * 109.47379 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47534 * 239.99686 * 2 1 3 25 25 H 1.09006 * 109.47130 * 120.00293 * 2 1 3 26 26 H 1.07995 * 125.16973 * 359.74782 * 4 3 2 27 27 H 1.07992 * 126.03527 * 179.97438 * 8 7 6 28 28 H 0.96992 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2443 2.0824 1.1162 5 16 2.8229 3.7001 0.7443 6 6 2.7420 3.3549 -0.9835 7 7 2.9694 3.9200 -2.1718 8 6 2.6909 3.0641 -3.1372 9 6 2.2607 1.8811 -2.5492 10 6 1.8473 0.6591 -3.2374 11 8 1.3861 -0.2759 -2.5990 12 6 1.9804 0.5591 -4.6355 13 1 2.3883 1.3850 -5.1996 14 6 1.5842 -0.6139 -5.2960 15 7 1.0918 -1.6123 -4.6142 16 14 1.7615 -0.7467 -7.1508 17 1 2.3422 0.5118 -7.6839 18 1 2.6571 -1.8839 -7.4823 19 1 0.4266 -0.9737 -7.7606 20 7 2.3024 2.0933 -1.1634 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0828 1.6930 2.1104 27 1 2.7814 3.2503 -4.1971 28 1 0.8176 -2.4229 -5.0708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074079881.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:57 Heat of formation + Delta-G solvation = 46.305471 kcal Electronic energy + Delta-G solvation = -16021.870907 eV Core-core repulsion = 13358.829625 eV Total energy + Delta-G solvation = -2663.041282 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.82205 -36.74263 -36.59078 -32.87788 -32.06707 -29.88109 -28.88257 -26.59106 -24.16929 -22.64966 -21.26319 -20.93777 -18.30669 -17.70600 -16.36733 -15.54969 -15.39784 -14.83327 -14.54649 -13.93456 -13.73048 -13.05131 -12.82797 -12.64638 -12.31005 -12.08519 -11.60580 -11.34188 -11.20386 -10.79487 -10.74970 -10.59413 -10.49689 -10.23401 -9.79889 -9.53861 -9.11986 -8.21755 -7.63626 -6.97570 -6.51622 -5.11505 1.28872 1.36332 2.03743 2.62494 2.96842 3.04379 3.09053 3.18142 3.38805 3.89061 4.29576 4.99016 5.21911 5.43834 5.53458 5.60695 5.77508 5.90489 6.06801 6.12062 6.25186 6.39757 6.69525 6.81785 6.97620 7.06927 7.20609 7.54387 7.88930 8.31947 8.56970 8.61798 10.09297 10.30275 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.007679 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.645762 B = 3645.347975 C = 4434.697332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C 0.125 3.875 4 C -0.257 4.257 5 S 0.140 5.860 6 C 0.104 3.896 7 N -0.463 5.463 8 C 0.033 3.967 9 C -0.028 4.028 10 C 0.409 3.591 11 O -0.538 6.538 12 C -0.492 4.492 13 H 0.078 0.922 14 C 0.080 3.920 15 N -0.725 5.725 16 Si 0.912 3.088 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.272 1.272 20 N -0.378 5.378 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.070 0.930 26 H 0.187 0.813 27 H 0.188 0.812 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 3.091 6.551 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.134 4.134 3 C 0.014 3.986 4 C -0.394 4.394 5 S 0.390 5.610 6 C -0.258 4.258 7 N -0.186 5.186 8 C -0.121 4.121 9 C -0.144 4.144 10 C 0.307 3.693 11 O -0.430 6.430 12 C -0.523 4.523 13 H 0.096 0.904 14 C -0.145 4.145 15 N -0.353 5.353 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.197 1.197 20 N -0.055 5.055 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.157 0.843 25 H 0.089 0.911 26 H 0.204 0.796 27 H 0.205 0.795 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.184 4.362 7.626 8.865 hybrid contribution -0.513 -1.733 -1.545 2.378 sum 0.671 2.629 6.081 6.659 Atomic orbital electron populations 1.21462 0.93922 1.01848 1.00741 1.21091 0.97293 0.88485 1.06502 1.19423 0.98863 0.97420 0.82881 1.24720 1.14969 0.98111 1.01557 1.84105 1.75065 1.12669 0.89204 1.26171 1.11781 0.87110 1.00721 1.70053 1.22331 1.31460 0.94801 1.23015 1.02002 0.88538 0.98538 1.24648 1.09875 1.02586 0.77267 1.17025 0.80975 0.82365 0.88927 1.90435 1.46364 1.39100 1.67126 1.20519 1.38089 1.00969 0.92770 0.90351 1.25986 0.92894 0.94867 1.00767 1.69958 1.24832 1.03049 1.37419 0.86207 0.78886 0.79612 0.81714 1.18076 1.19734 1.19715 1.43747 1.44138 1.11258 1.06402 0.94375 0.92223 0.92109 0.84315 0.91120 0.79600 0.79490 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.39 37.16 0.35 -1.84 15 2 C -0.09 -1.77 5.54 -27.88 -0.15 -1.93 15 3 C 0.13 2.40 6.01 -82.09 -0.49 1.91 15 4 C -0.26 -3.99 10.84 28.90 0.31 -3.68 15 5 S 0.14 2.25 23.38 -107.50 -2.51 -0.27 15 6 C 0.10 2.21 8.92 -88.00 -0.78 1.43 15 7 N -0.46 -10.30 11.24 -12.66 -0.14 -10.44 15 8 C 0.03 0.73 11.33 -17.23 -0.20 0.54 15 9 C -0.03 -0.68 7.15 -80.54 -0.58 -1.26 15 10 C 0.41 10.92 6.86 -35.41 -0.24 10.67 15 11 O -0.54 -15.11 10.54 4.69 0.05 -15.06 15 12 C -0.49 -12.66 8.96 -37.83 -0.34 -13.00 15 13 H 0.08 1.84 6.88 -52.48 -0.36 1.48 15 14 C 0.08 1.98 5.50 -17.32 -0.10 1.89 15 15 N -0.72 -19.15 11.71 55.57 0.65 -18.50 15 16 Si 0.91 18.10 29.56 -169.99 -5.03 13.07 15 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 20 N -0.38 -8.43 3.20 -55.10 -0.18 -8.61 15 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.06 1.27 7.75 -51.93 -0.40 0.86 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.14 3.21 4.80 -51.97 -0.25 2.96 15 25 H 0.07 1.08 8.11 -51.93 -0.42 0.66 15 26 H 0.19 2.13 8.06 -52.49 -0.42 1.71 15 27 H 0.19 3.62 7.37 -52.49 -0.39 3.23 15 28 H 0.28 6.54 8.29 -40.82 -0.34 6.20 15 LS Contribution 258.99 15.07 3.90 3.90 Total: -1.00 -29.98 258.99 -7.69 -37.68 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.22 Total: 3.48 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.22 Total: -5.26 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.33 Total: -37.55 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.05 Total: -15.06 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.51 Total: -0.27 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.98 -7.69 -37.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079881.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.982 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds