Wall clock time and date at job start Mon Mar 30 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47478 * 2 1 4 4 C 1.31477 * 121.88346 * 88.93082 * 3 2 1 5 5 S 1.75781 * 109.66556 * 180.02562 * 4 3 2 6 6 C 1.76380 * 90.69103 * 359.77887 * 5 4 3 7 7 N 1.33535 * 141.35885 * 180.02562 * 6 5 4 8 8 C 1.31987 * 109.90603 * 179.97438 * 7 6 5 9 9 C 1.38932 * 107.93683 * 359.97438 * 8 7 6 10 10 C 1.46215 * 126.86840 * 180.02562 * 9 8 7 11 11 O 1.22250 * 120.00232 * 185.98488 * 10 9 8 12 12 C 1.40795 * 119.99858 * 5.98344 * 10 9 8 13 13 H 1.08008 * 120.00347 * 0.02562 * 12 10 9 14 14 C 1.40324 * 120.00005 * 179.97438 * 12 10 9 15 15 N 1.30542 * 120.00020 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99949 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47201 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47301 * 120.00264 * 16 14 12 19 19 H 1.48507 * 109.47108 * 240.00362 * 16 14 12 20 20 N 1.34798 * 109.19827 * 359.97438 * 6 5 4 21 21 H 1.09000 * 109.47105 * 300.00069 * 1 2 3 22 22 H 1.08998 * 109.46991 * 60.00355 * 1 2 3 23 23 H 1.09004 * 109.47379 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47534 * 239.99686 * 2 1 3 25 25 H 1.09006 * 109.47130 * 120.00293 * 2 1 3 26 26 H 1.07995 * 125.16973 * 359.74782 * 4 3 2 27 27 H 1.07992 * 126.03527 * 179.97438 * 8 7 6 28 28 H 0.96992 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2443 2.0824 1.1162 5 16 2.8229 3.7001 0.7443 6 6 2.7420 3.3549 -0.9835 7 7 2.9694 3.9200 -2.1718 8 6 2.6909 3.0641 -3.1372 9 6 2.2607 1.8811 -2.5492 10 6 1.8473 0.6591 -3.2374 11 8 1.3861 -0.2759 -2.5990 12 6 1.9804 0.5591 -4.6355 13 1 2.3883 1.3850 -5.1996 14 6 1.5842 -0.6139 -5.2960 15 7 1.0918 -1.6123 -4.6142 16 14 1.7615 -0.7467 -7.1508 17 1 2.3422 0.5118 -7.6839 18 1 2.6571 -1.8839 -7.4823 19 1 0.4266 -0.9737 -7.7606 20 7 2.3024 2.0933 -1.1634 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0828 1.6930 2.1104 27 1 2.7814 3.2503 -4.1971 28 1 0.8176 -2.4229 -5.0708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074079881.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:56 Heat of formation + Delta-G solvation = 28.252476 kcal Electronic energy + Delta-G solvation = -16022.653744 eV Core-core repulsion = 13358.829625 eV Total energy + Delta-G solvation = -2663.824119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.41974 -38.53144 -38.23546 -34.79233 -33.59221 -31.52859 -30.51632 -28.40602 -25.65216 -24.33625 -22.93437 -22.53078 -20.02197 -19.19186 -18.27227 -17.17693 -17.07195 -16.47337 -15.96278 -15.55103 -15.23303 -14.77178 -14.42451 -14.17323 -14.07452 -13.69444 -13.31126 -12.85416 -12.79887 -12.46488 -12.27586 -12.19563 -12.02645 -11.76198 -11.31580 -11.22888 -10.96210 -9.77681 -9.55482 -8.50160 -8.38302 -7.09402 -0.23556 -0.10244 0.65450 1.04455 1.40221 1.41075 1.57645 1.66281 1.70325 2.22338 2.44872 3.51582 3.60231 3.66041 4.05259 4.25910 4.37041 4.45680 4.50028 4.60355 4.71701 4.93257 5.11974 5.15864 5.32521 5.44929 5.57592 5.94412 6.01861 6.62640 6.66637 6.72014 8.19680 8.42961 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.007679 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.645762 B = 3645.347975 C = 4434.697332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C 0.068 3.932 4 C -0.216 4.216 5 S 0.223 5.777 6 C 0.084 3.916 7 N -0.487 5.487 8 C 0.044 3.956 9 C -0.080 4.080 10 C 0.391 3.609 11 O -0.566 6.566 12 C -0.521 4.521 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.772 5.772 16 Si 0.994 3.006 17 H -0.246 1.246 18 H -0.265 1.265 19 H -0.265 1.265 20 N -0.383 5.383 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.239 0.761 27 H 0.205 0.795 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 4.181 8.106 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.041 4.041 4 C -0.352 4.352 5 S 0.472 5.528 6 C -0.278 4.278 7 N -0.211 5.211 8 C -0.111 4.111 9 C -0.196 4.196 10 C 0.290 3.710 11 O -0.460 6.460 12 C -0.552 4.552 13 H 0.110 0.890 14 C -0.189 4.189 15 N -0.401 5.401 16 Si 0.813 3.187 17 H -0.169 1.169 18 H -0.190 1.190 19 H -0.190 1.190 20 N -0.060 5.060 21 H 0.092 0.908 22 H 0.032 0.968 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.255 0.745 27 H 0.222 0.778 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.700 5.462 9.211 10.843 hybrid contribution -0.644 -1.967 -1.756 2.714 sum 1.056 3.495 7.455 8.301 Atomic orbital electron populations 1.21381 0.93882 1.01724 1.00033 1.20902 0.97364 0.88597 1.05830 1.19747 1.02985 0.98385 0.83027 1.25449 1.09954 0.97392 1.02402 1.83935 1.72900 1.11719 0.84202 1.27294 1.10373 0.86931 1.03166 1.70070 1.24003 1.31652 0.95366 1.23307 1.00382 0.87855 0.99518 1.24265 1.13712 1.02706 0.78912 1.17461 0.80681 0.83064 0.89745 1.90433 1.47411 1.40304 1.67829 1.20963 1.38956 1.02178 0.93132 0.88991 1.27090 0.91678 0.93893 1.06216 1.70066 1.25993 1.03978 1.40019 0.84996 0.79113 0.80031 0.74537 1.16898 1.18997 1.18991 1.43896 1.43663 1.11916 1.06513 0.90821 0.96835 0.92003 0.89245 0.87245 0.74505 0.77841 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 9.39 71.98 0.68 -3.38 15 2 C -0.09 -3.27 5.54 29.85 0.17 -3.10 15 3 C 0.07 2.54 6.01 41.24 0.25 2.78 15 4 C -0.22 -5.75 10.84 67.32 0.73 -5.02 15 5 S 0.22 6.25 23.38 -56.49 -1.32 4.93 15 6 C 0.08 3.47 8.92 179.43 1.60 5.07 15 7 N -0.49 -21.59 11.24 -193.95 -2.18 -23.77 15 8 C 0.04 2.01 11.33 84.84 0.96 2.97 15 9 C -0.08 -4.03 7.15 40.03 0.29 -3.74 15 10 C 0.39 22.11 6.86 24.97 0.17 22.29 15 11 O -0.57 -33.96 10.54 -6.14 -0.06 -34.03 15 12 C -0.52 -27.99 8.96 23.40 0.21 -27.78 15 13 H 0.09 4.47 6.88 -2.91 -0.02 4.45 15 14 C 0.03 1.63 5.50 85.39 0.47 2.10 15 15 N -0.77 -42.66 11.71 21.88 0.26 -42.40 15 16 Si 0.99 37.61 29.56 68.60 2.03 39.63 15 17 H -0.25 -8.75 7.11 99.48 0.71 -8.05 15 18 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 19 H -0.27 -9.65 7.11 99.48 0.71 -8.95 15 20 N -0.38 -17.22 3.20 -328.24 -1.05 -18.27 15 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.01 0.57 7.75 -2.39 -0.02 0.55 15 23 H 0.06 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.09 4.37 4.80 -3.10 -0.01 4.35 15 25 H 0.11 3.09 8.11 -2.38 -0.02 3.07 15 26 H 0.24 3.76 8.06 -2.91 -0.02 3.73 15 27 H 0.20 8.08 7.37 -2.91 -0.02 8.05 15 28 H 0.28 13.99 8.29 -92.71 -0.77 13.22 15 Total: -1.00 -70.44 258.99 4.38 -66.06 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.20 Total: 15.65 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.52 Total: -7.80 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.97 Total: -84.44 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.06 Total: -34.03 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.32 Total: 4.93 kcal Total: -70.44 4.38 -66.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074079881.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.316 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds