Wall clock time and date at job start Mon Mar 30 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48504 * 109.47125 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 119.99789 * 3 2 1 6 6 H 1.48498 * 109.47572 * 240.00037 * 3 2 1 7 7 C 1.40211 * 119.99676 * 179.72539 * 2 1 3 8 8 H 1.07997 * 119.99960 * 3.56613 * 7 2 1 9 9 C 1.39568 * 119.99812 * 183.56339 * 7 2 1 10 10 N 1.33203 * 125.69950 * 5.95490 * 9 7 2 11 11 C 1.32215 * 109.69969 * 179.82040 * 10 9 7 12 12 C 1.39047 * 108.31152 * 0.43479 * 11 10 9 13 13 C 1.47160 * 126.68921 * 179.73888 * 12 11 10 14 14 C 1.40176 * 120.20753 * 134.72422 * 13 12 11 15 15 F 1.35100 * 120.10915 * 359.97438 * 14 13 12 16 16 C 1.38106 * 119.78507 * 179.74010 * 14 13 12 17 17 C 1.38409 * 120.20982 * 0.53669 * 16 14 13 18 18 C 1.38416 * 120.42385 * 359.73965 * 17 16 14 19 19 C 1.38102 * 120.21122 * 359.97313 * 18 17 16 20 20 F 1.35099 * 120.10849 * 180.02562 * 19 18 17 21 21 N 1.37535 * 106.61529 * 359.73829 * 12 11 10 22 22 H 0.97002 * 126.61214 * 180.02562 * 21 12 11 23 23 H 0.96995 * 120.00499 * 174.79937 * 1 2 3 24 24 H 1.07997 * 125.84256 * 180.17643 * 11 10 9 25 25 H 1.07998 * 119.89262 * 180.25128 * 16 14 13 26 26 H 1.07995 * 119.79152 * 179.75914 * 17 16 14 27 27 H 1.07996 * 119.89633 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 1.2762 2.7464 0.0006 5 1 3.0949 1.6963 1.2126 6 1 3.0950 1.6964 -1.2125 7 6 2.0081 -1.2143 0.0058 8 1 1.4697 -2.1489 -0.0479 9 6 3.4018 -1.2151 0.0809 10 7 4.1710 -0.1430 0.2631 11 6 5.4422 -0.5056 0.2881 12 6 5.5075 -1.8823 0.1037 13 6 6.7259 -2.7063 0.0570 14 6 6.7878 -3.9143 0.7654 15 9 5.7284 -4.3273 1.4950 16 6 7.9336 -4.6835 0.7112 17 6 9.0226 -4.2595 -0.0306 18 6 8.9730 -3.0653 -0.7287 19 6 7.8339 -2.2854 -0.6915 20 9 7.7875 -1.1204 -1.3741 21 7 4.2114 -2.3235 -0.0267 22 1 3.9234 -3.2391 -0.1669 23 1 -0.4850 -0.8365 -0.0761 24 1 6.2857 0.1550 0.4240 25 1 7.9818 -5.6165 1.2529 26 1 9.9166 -4.8643 -0.0651 27 1 9.8275 -2.7428 -1.3051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074081122.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:26 Heat of formation + Delta-G solvation = -52.271221 kcal Electronic energy + Delta-G solvation = -17415.728627 eV Core-core repulsion = 14194.572352 eV Total energy + Delta-G solvation = -3221.156275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.01073 -49.89294 -42.09835 -39.45558 -35.75022 -33.55048 -32.69976 -31.27459 -30.36321 -26.68824 -24.00616 -23.63430 -22.15229 -21.91490 -20.00618 -19.12822 -18.38886 -17.94448 -16.95536 -16.67975 -16.58198 -16.27674 -15.70806 -15.55224 -15.39122 -15.26354 -14.78338 -14.42545 -13.91467 -13.65601 -13.02772 -12.89967 -12.68737 -12.60283 -12.26253 -11.75149 -11.29392 -10.82130 -10.33828 -9.98322 -9.75468 -9.42508 -9.08722 -6.68713 -0.18587 0.01703 1.19068 1.60882 1.71008 2.03977 2.27955 2.38862 2.47537 2.62759 2.90963 3.17352 3.47538 3.71829 3.87702 3.95401 4.14418 4.24379 4.60442 4.86128 4.94358 5.03383 5.10249 5.21599 5.23198 5.38035 5.60621 5.82985 5.85752 6.21795 6.55648 6.95990 7.50113 7.99808 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.006828 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.501380 B = 4099.970181 C = 4696.248984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 1.167 2.833 4 H -0.313 1.313 5 H -0.276 1.276 6 H -0.293 1.293 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.363 3.637 10 N -0.609 5.609 11 C 0.033 3.967 12 C -0.105 4.105 13 C -0.073 4.073 14 C 0.090 3.910 15 F -0.148 7.148 16 C -0.147 4.147 17 C -0.057 4.057 18 C -0.144 4.144 19 C 0.108 3.892 20 F -0.139 7.139 21 N -0.599 5.599 22 H 0.412 0.588 23 H 0.281 0.719 24 H 0.171 0.829 25 H 0.169 0.831 26 H 0.191 0.809 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.882 -9.689 -0.662 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.183 4.183 3 Si 0.997 3.003 4 H -0.244 1.244 5 H -0.203 1.203 6 H -0.220 1.220 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.120 3.880 10 N -0.335 5.335 11 C -0.120 4.120 12 C -0.217 4.217 13 C -0.076 4.076 14 C 0.070 3.930 15 F -0.127 7.127 16 C -0.166 4.166 17 C -0.075 4.075 18 C -0.163 4.163 19 C 0.088 3.912 20 F -0.118 7.118 21 N -0.206 5.206 22 H 0.249 0.751 23 H 0.092 0.908 24 H 0.188 0.812 25 H 0.186 0.814 26 H 0.208 0.792 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 18.321 -7.309 -0.495 19.731 hybrid contribution -0.757 -2.839 -0.146 2.941 sum 17.564 -10.148 -0.641 20.295 Atomic orbital electron populations 1.70650 1.07914 1.32515 1.34875 1.28035 0.95488 1.06505 0.88226 0.81860 0.70424 0.68677 0.79384 1.24406 1.20310 1.22029 1.19420 0.88338 0.96759 1.52084 0.91101 1.20193 0.92315 0.81126 0.94406 1.69362 1.03354 1.27528 1.33296 1.22715 0.94327 0.91721 1.03251 1.19354 0.83874 0.94189 1.24237 1.18130 0.92734 0.95260 1.01481 1.18014 0.86090 0.94364 0.94512 1.91465 1.56160 1.89780 1.75285 1.21478 0.91185 1.01396 1.02540 1.21407 0.98751 0.94533 0.92767 1.21512 0.96710 0.95415 1.02621 1.17818 0.95044 0.84221 0.94151 1.91493 1.96795 1.46126 1.77381 1.43083 1.05318 1.09678 1.62509 0.75104 0.90802 0.81213 0.81392 0.79180 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.28 13.65 21.87 0.30 -46.98 15 2 C 0.04 1.99 5.52 85.34 0.47 2.46 15 3 Si 1.17 59.61 25.83 68.60 1.77 61.39 15 4 H -0.31 -15.25 7.11 99.48 0.71 -14.54 15 5 H -0.28 -14.32 6.76 99.48 0.67 -13.65 15 6 H -0.29 -15.14 7.11 99.48 0.71 -14.44 15 7 C -0.53 -29.96 9.88 23.07 0.23 -29.73 15 8 H 0.07 4.01 8.05 -2.91 -0.02 3.99 15 9 C 0.36 19.77 7.34 133.37 0.98 20.75 15 10 N -0.61 -32.97 6.30 -192.43 -1.21 -34.18 15 11 C 0.03 1.55 11.10 84.83 0.94 2.49 15 12 C -0.11 -4.63 6.27 40.79 0.26 -4.38 15 13 C -0.07 -2.51 5.84 -19.99 -0.12 -2.63 15 14 C 0.09 2.67 7.29 22.71 0.17 2.83 15 15 F -0.15 -5.07 16.66 44.97 0.75 -4.32 15 16 C -0.15 -2.77 10.01 22.28 0.22 -2.55 15 17 C -0.06 -0.77 10.04 22.35 0.22 -0.54 15 18 C -0.14 -2.60 10.01 22.28 0.22 -2.37 15 19 C 0.11 3.11 7.26 22.71 0.16 3.27 15 20 F -0.14 -4.57 16.23 44.97 0.73 -3.84 15 21 N -0.60 -28.29 6.10 -180.43 -1.10 -29.39 15 22 H 0.41 17.50 8.96 -92.71 -0.83 16.67 15 23 H 0.28 15.34 8.72 -92.71 -0.81 14.54 15 24 H 0.17 7.04 8.06 -2.91 -0.02 7.02 15 25 H 0.17 2.14 8.06 -2.91 -0.02 2.11 15 26 H 0.19 0.75 8.06 -2.91 -0.02 0.72 15 27 H 0.17 1.97 8.06 -2.91 -0.02 1.95 15 Total: -1.00 -68.67 254.26 5.32 -63.35 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.33 Total: 4.38 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 3.76 Total: -10.40 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -2.01 Total: -110.55 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 1.48 Total: -8.16 kcal Atomic # 14 Polarization: 59.61 SS G_CDS: 1.77 Total: 61.39 kcal Total: -68.67 5.32 -63.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074081122.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.074 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds