Wall clock time and date at job start Mon Mar 30 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86799 * 120.00243 * 2 1 4 4 H 1.48508 * 109.47167 * 274.98583 * 3 2 1 5 5 H 1.48499 * 109.46977 * 34.98380 * 3 2 1 6 6 H 1.48499 * 109.47211 * 154.98653 * 3 2 1 7 7 C 1.40099 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 186.20813 * 7 2 1 9 9 C 1.39740 * 120.00136 * 6.21447 * 7 2 1 10 10 C 1.39982 * 126.94654 * 172.91946 * 9 7 2 11 11 N 1.32425 * 107.90662 * 180.02562 * 10 9 7 12 12 C 1.32202 * 110.03306 * 359.97438 * 11 10 9 13 13 C 1.47249 * 125.40977 * 180.02562 * 12 11 10 14 14 C 1.40097 * 120.20311 * 179.70701 * 13 12 11 15 15 F 1.35096 * 120.10496 * 359.97438 * 14 13 12 16 16 C 1.38139 * 119.78898 * 179.74762 * 14 13 12 17 17 C 1.38382 * 120.20198 * 0.52471 * 16 14 13 18 18 C 1.38376 * 120.41799 * 359.73017 * 17 16 14 19 19 C 1.38140 * 120.20254 * 0.02562 * 18 17 16 20 20 F 1.35093 * 120.10644 * 179.97438 * 19 18 17 21 21 N 1.36762 * 109.18463 * 0.02562 * 12 11 10 22 22 H 0.96998 * 126.61004 * 179.73056 * 21 12 11 23 23 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 24 24 H 1.07997 * 126.04447 * 0.05259 * 10 9 7 25 25 H 1.07999 * 119.89705 * 180.27719 * 16 14 13 26 26 H 1.08005 * 119.78745 * 179.69714 * 17 16 14 27 27 H 1.07995 * 119.90302 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3846 2.1072 -1.3948 5 1 1.4966 2.6199 0.8027 6 1 3.5887 1.4120 0.5920 7 6 2.0088 -1.2133 0.0005 8 1 3.0841 -1.2161 0.1017 9 6 1.3163 -2.4200 -0.1299 10 6 1.8708 -3.6959 -0.2852 11 7 0.8752 -4.5646 -0.3730 12 6 -0.2840 -3.9354 -0.2843 13 6 -1.6088 -4.5757 -0.3405 14 6 -2.7711 -3.8015 -0.2287 15 9 -2.6810 -2.4632 -0.0681 16 6 -4.0096 -4.4104 -0.2879 17 6 -4.1042 -5.7819 -0.4461 18 6 -2.9617 -6.5554 -0.5521 19 6 -1.7146 -5.9636 -0.5002 20 9 -0.6004 -6.7206 -0.6034 21 7 -0.0575 -2.5953 -0.1319 22 1 -0.7295 -1.9011 -0.0460 23 1 -0.4850 0.8400 -0.0004 24 1 2.9243 -3.9303 -0.3258 25 1 -4.9068 -3.8148 -0.2064 26 1 -5.0759 -6.2516 -0.4866 27 1 -3.0452 -7.6251 -0.6750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074081124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:29 Heat of formation + Delta-G solvation = -29.192554 kcal Electronic energy + Delta-G solvation = -17581.192516 eV Core-core repulsion = 14361.037007 eV Total energy + Delta-G solvation = -3220.155509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.48650 -48.12406 -39.88737 -38.01062 -34.01822 -31.38142 -30.56245 -29.86535 -28.55516 -25.06122 -22.62990 -22.26874 -20.17758 -19.15857 -18.09960 -17.51783 -16.41683 -16.09724 -15.42247 -15.08528 -15.02149 -14.59761 -14.58101 -13.81311 -13.26407 -13.24669 -13.00509 -12.28507 -12.06638 -11.76098 -11.59470 -11.44134 -11.33647 -11.18882 -10.81730 -10.48683 -9.78318 -8.86430 -8.59415 -8.46840 -8.35935 -7.16629 -7.02023 -4.51481 1.24717 1.40979 2.79380 2.93858 2.99381 3.42112 3.72715 3.82769 4.34747 4.60381 4.72477 4.91012 5.03106 5.08449 5.11194 5.42576 5.58487 6.10791 6.23072 6.39873 6.44488 6.54715 6.70461 6.93270 6.98159 7.22012 7.53951 7.63033 8.26745 8.41920 8.52331 9.32431 9.58386 9.89993 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.007068 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.241719 B = 3960.583106 C = 4772.170812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.064 3.936 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.428 4.428 8 H 0.102 0.898 9 C 0.217 3.783 10 C -0.151 4.151 11 N -0.430 5.430 12 C 0.067 3.933 13 C -0.013 4.013 14 C 0.089 3.911 15 F -0.128 7.128 16 C -0.152 4.152 17 C -0.106 4.106 18 C -0.157 4.157 19 C 0.120 3.880 20 F -0.114 7.114 21 N -0.564 5.564 22 H 0.430 0.570 23 H 0.292 0.708 24 H 0.151 0.849 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 -3.386 -0.317 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.152 4.152 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.120 0.880 9 C 0.096 3.904 10 C -0.308 4.308 11 N -0.148 5.148 12 C -0.176 4.176 13 C -0.017 4.017 14 C 0.068 3.932 15 F -0.107 7.107 16 C -0.171 4.171 17 C -0.125 4.125 18 C -0.176 4.176 19 C 0.098 3.902 20 F -0.092 7.092 21 N -0.184 5.184 22 H 0.280 0.720 23 H 0.103 0.897 24 H 0.168 0.832 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.102 -4.151 -0.412 8.237 hybrid contribution 0.140 2.126 0.127 2.134 sum -6.962 -2.026 -0.285 7.256 Atomic orbital electron populations 1.68981 1.07968 1.30673 1.38066 1.26125 0.94950 1.02430 0.91736 0.85805 0.80072 0.78839 0.79229 1.19233 1.20035 1.18169 1.18907 0.95773 0.88144 1.43506 0.88003 1.19180 0.81786 0.95100 0.94327 1.22431 0.97035 0.88649 1.22643 1.69459 0.97182 1.34371 1.13810 1.19751 0.91562 0.82399 1.23916 1.17815 0.89878 0.91688 1.02325 1.17413 0.93016 0.77404 1.05365 1.91430 1.96598 1.29673 1.92986 1.20898 0.95692 0.95728 1.04751 1.20588 0.97994 0.92396 1.01520 1.20986 0.90696 1.00864 1.05023 1.17215 0.82936 0.87066 1.02963 1.91554 1.50491 1.74349 1.92851 1.44031 1.08404 1.07216 1.58750 0.72017 0.89663 0.83195 0.84770 0.84866 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.44 10.81 55.56 0.60 -19.84 15 2 C 0.06 1.53 5.49 -17.28 -0.09 1.43 15 3 Si 0.94 17.81 29.57 -169.99 -5.03 12.78 15 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.43 -10.91 9.34 -38.32 -0.36 -11.27 15 8 H 0.10 2.39 7.86 -52.48 -0.41 1.98 15 9 C 0.22 5.89 6.74 -83.64 -0.56 5.33 15 10 C -0.15 -3.97 11.94 -16.64 -0.20 -4.17 15 11 N -0.43 -11.59 9.75 -10.23 -0.10 -11.69 15 12 C 0.07 1.75 7.73 -154.01 -1.19 0.56 15 13 C -0.01 -0.29 5.89 -104.84 -0.62 -0.91 15 14 C 0.09 1.76 7.29 -38.92 -0.28 1.47 15 15 F -0.13 -2.74 14.57 2.25 0.03 -2.71 15 16 C -0.15 -2.29 10.01 -39.56 -0.40 -2.69 15 17 C -0.11 -1.40 10.03 -39.48 -0.40 -1.79 15 18 C -0.16 -2.34 10.01 -39.57 -0.40 -2.73 15 19 C 0.12 2.35 7.29 -38.92 -0.28 2.07 15 20 F -0.11 -2.44 15.74 2.25 0.04 -2.40 15 21 N -0.56 -15.21 5.61 -8.26 -0.05 -15.26 15 22 H 0.43 11.38 4.18 -40.82 -0.17 11.21 15 23 H 0.29 6.53 8.30 -40.82 -0.34 6.19 15 24 H 0.15 3.52 8.06 -52.49 -0.42 3.10 15 25 H 0.13 1.64 8.06 -52.49 -0.42 1.21 15 26 H 0.13 1.23 8.06 -52.48 -0.42 0.81 15 27 H 0.14 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 251.70 15.07 3.79 3.79 Total: -1.00 -29.22 251.70 -6.90 -36.12 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -1.41 Total: 11.91 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -4.78 Total: -12.70 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.45 Total: -46.79 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.22 -6.90 -36.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074081124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.923 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds