Wall clock time and date at job start Mon Mar 30 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86799 * 120.00243 * 2 1 4 4 H 1.48508 * 109.47167 * 274.98583 * 3 2 1 5 5 H 1.48499 * 109.46977 * 34.98380 * 3 2 1 6 6 H 1.48499 * 109.47211 * 154.98653 * 3 2 1 7 7 C 1.40099 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 186.20813 * 7 2 1 9 9 C 1.39740 * 120.00136 * 6.21447 * 7 2 1 10 10 C 1.39982 * 126.94654 * 172.91946 * 9 7 2 11 11 N 1.32425 * 107.90662 * 180.02562 * 10 9 7 12 12 C 1.32202 * 110.03306 * 359.97438 * 11 10 9 13 13 C 1.47249 * 125.40977 * 180.02562 * 12 11 10 14 14 C 1.40097 * 120.20311 * 179.70701 * 13 12 11 15 15 F 1.35096 * 120.10496 * 359.97438 * 14 13 12 16 16 C 1.38139 * 119.78898 * 179.74762 * 14 13 12 17 17 C 1.38382 * 120.20198 * 0.52471 * 16 14 13 18 18 C 1.38376 * 120.41799 * 359.73017 * 17 16 14 19 19 C 1.38140 * 120.20254 * 0.02562 * 18 17 16 20 20 F 1.35093 * 120.10644 * 179.97438 * 19 18 17 21 21 N 1.36762 * 109.18463 * 0.02562 * 12 11 10 22 22 H 0.96998 * 126.61004 * 179.73056 * 21 12 11 23 23 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 24 24 H 1.07997 * 126.04447 * 0.05259 * 10 9 7 25 25 H 1.07999 * 119.89705 * 180.27719 * 16 14 13 26 26 H 1.08005 * 119.78745 * 179.69714 * 17 16 14 27 27 H 1.07995 * 119.90302 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3846 2.1072 -1.3948 5 1 1.4966 2.6199 0.8027 6 1 3.5887 1.4120 0.5920 7 6 2.0088 -1.2133 0.0005 8 1 3.0841 -1.2161 0.1017 9 6 1.3163 -2.4200 -0.1299 10 6 1.8708 -3.6959 -0.2852 11 7 0.8752 -4.5646 -0.3730 12 6 -0.2840 -3.9354 -0.2843 13 6 -1.6088 -4.5757 -0.3405 14 6 -2.7711 -3.8015 -0.2287 15 9 -2.6810 -2.4632 -0.0681 16 6 -4.0096 -4.4104 -0.2879 17 6 -4.1042 -5.7819 -0.4461 18 6 -2.9617 -6.5554 -0.5521 19 6 -1.7146 -5.9636 -0.5002 20 9 -0.6004 -6.7206 -0.6034 21 7 -0.0575 -2.5953 -0.1319 22 1 -0.7295 -1.9011 -0.0460 23 1 -0.4850 0.8400 -0.0004 24 1 2.9243 -3.9303 -0.3258 25 1 -4.9068 -3.8148 -0.2064 26 1 -5.0759 -6.2516 -0.4866 27 1 -3.0452 -7.6251 -0.6750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074081124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:29 Heat of formation + Delta-G solvation = -46.563490 kcal Electronic energy + Delta-G solvation = -17581.945776 eV Core-core repulsion = 14361.037007 eV Total energy + Delta-G solvation = -3220.908769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.06640 -49.69234 -41.80605 -39.39186 -35.86159 -32.95630 -32.50025 -31.22032 -30.36032 -26.84052 -24.18387 -23.70166 -22.04592 -21.00395 -19.97943 -19.00065 -17.98122 -17.72314 -16.99329 -16.65316 -16.51336 -16.18462 -16.15882 -15.37175 -15.22190 -14.80901 -14.70551 -13.95447 -13.66011 -13.45257 -13.14991 -12.88462 -12.84290 -12.70441 -12.37771 -12.02747 -11.50148 -10.58841 -10.50101 -10.39458 -9.71276 -8.96135 -8.89999 -6.45536 -0.17241 0.05616 1.20222 1.37140 1.54523 1.78442 2.13527 2.24193 2.78960 2.82294 3.00148 3.17012 3.53657 3.55247 3.88104 4.04442 4.27785 4.61088 4.90399 4.93558 5.07383 5.09113 5.11006 5.18146 5.24523 5.58822 5.71230 5.89343 6.32896 6.50135 6.63699 7.35164 7.61491 8.13010 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.007068 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.241719 B = 3960.583106 C = 4772.170812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.024 3.976 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.462 4.462 8 H 0.110 0.890 9 C 0.184 3.816 10 C -0.190 4.190 11 N -0.457 5.457 12 C 0.062 3.938 13 C -0.067 4.067 14 C 0.073 3.927 15 F -0.146 7.146 16 C -0.139 4.139 17 C -0.064 4.064 18 C -0.141 4.141 19 C 0.102 3.898 20 F -0.133 7.133 21 N -0.573 5.573 22 H 0.427 0.573 23 H 0.301 0.699 24 H 0.163 0.837 25 H 0.173 0.827 26 H 0.196 0.804 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -3.930 -0.434 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.189 4.189 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.497 4.497 8 H 0.128 0.872 9 C 0.064 3.936 10 C -0.344 4.344 11 N -0.175 5.175 12 C -0.185 4.185 13 C -0.071 4.071 14 C 0.052 3.948 15 F -0.125 7.125 16 C -0.158 4.158 17 C -0.082 4.082 18 C -0.159 4.159 19 C 0.081 3.919 20 F -0.111 7.111 21 N -0.194 5.194 22 H 0.278 0.722 23 H 0.112 0.888 24 H 0.180 0.820 25 H 0.191 0.809 26 H 0.213 0.787 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.204 -4.712 -0.527 11.252 hybrid contribution 0.723 2.063 0.148 2.191 sum -9.481 -2.649 -0.379 9.851 Atomic orbital electron populations 1.69022 1.09458 1.32051 1.38173 1.27162 0.95728 1.05767 0.90272 0.84651 0.78766 0.73657 0.79415 1.18672 1.19044 1.17353 1.19245 0.96417 0.88697 1.45320 0.87167 1.19638 0.82250 0.96073 0.95644 1.22662 0.97745 0.88898 1.25045 1.69422 0.97726 1.34735 1.15638 1.20670 0.93241 0.82333 1.22263 1.18147 0.88991 0.93398 1.06585 1.17942 0.94177 0.76723 1.05947 1.91383 1.96745 1.31101 1.93268 1.21443 0.94754 0.97122 1.02473 1.21387 0.99854 0.91156 0.95798 1.21526 0.88809 1.03120 1.02467 1.17763 0.84272 0.86238 1.03632 1.91505 1.51986 1.74503 1.93155 1.44158 1.08397 1.07643 1.59165 0.72249 0.88797 0.81997 0.80936 0.78661 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.73 10.81 21.86 0.24 -43.49 15 2 C 0.02 1.15 5.49 85.29 0.47 1.62 15 3 Si 1.02 36.74 29.57 68.60 2.03 38.76 15 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 15 6 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 7 C -0.46 -24.79 9.34 23.09 0.22 -24.58 15 8 H 0.11 5.46 7.86 -2.91 -0.02 5.43 15 9 C 0.18 10.66 6.74 38.88 0.26 10.93 15 10 C -0.19 -10.79 11.94 85.03 1.02 -9.77 15 11 N -0.46 -26.22 9.75 -186.28 -1.82 -28.04 15 12 C 0.06 3.42 7.73 136.03 1.05 4.48 15 13 C -0.07 -3.05 5.89 -20.01 -0.12 -3.16 15 14 C 0.07 2.81 7.29 22.70 0.17 2.97 15 15 F -0.15 -6.34 14.57 44.97 0.66 -5.68 15 16 C -0.14 -3.54 10.01 22.28 0.22 -3.32 15 17 C -0.06 -1.24 10.03 22.34 0.22 -1.01 15 18 C -0.14 -3.51 10.01 22.28 0.22 -3.29 15 19 C 0.10 3.91 7.29 22.70 0.17 4.08 15 20 F -0.13 -5.76 15.74 44.97 0.71 -5.05 15 21 N -0.57 -32.83 5.61 -180.04 -1.01 -33.84 15 22 H 0.43 23.92 4.18 -92.71 -0.39 23.54 15 23 H 0.30 13.71 8.30 -92.71 -0.77 12.94 15 24 H 0.16 8.27 8.06 -2.91 -0.02 8.25 15 25 H 0.17 3.13 8.06 -2.91 -0.02 3.11 15 26 H 0.20 1.63 8.06 -2.91 -0.02 1.61 15 27 H 0.18 3.02 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -70.92 251.70 5.55 -65.37 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.85 Total: 33.02 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.90 Total: -21.06 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -2.59 Total: -105.37 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 1.36 Total: -10.74 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.76 kcal Total: -70.92 5.55 -65.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074081124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds