Wall clock time and date at job start Mon Mar 30 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00336 * 2 1 4 4 H 1.48493 * 109.47229 * 270.00303 * 3 2 1 5 5 H 1.48502 * 109.46774 * 30.00109 * 3 2 1 6 6 H 1.48498 * 109.47134 * 149.99969 * 3 2 1 7 7 C 1.37881 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99778 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.36036 * 126.35074 * 269.95691 * 10 9 7 12 12 C 1.50700 * 124.94888 * 0.02562 * 11 10 9 13 13 Cl 1.80307 * 109.47093 * 90.00183 * 12 11 10 14 14 N 1.30106 * 110.10195 * 180.02562 * 11 10 9 15 15 C 1.35787 * 109.64359 * 359.97438 * 14 11 10 16 16 C 1.39734 * 133.60143 * 179.97438 * 15 14 11 17 17 C 1.36605 * 119.88806 * 180.02562 * 16 15 14 18 18 C 1.38776 * 120.66622 * 359.97438 * 17 16 15 19 19 C 1.37851 * 120.45485 * 0.03810 * 18 17 16 20 20 C 1.38058 * 126.34607 * 89.99869 * 10 9 7 21 21 H 0.96995 * 119.99452 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47232 * 60.00468 * 9 7 2 23 23 H 1.08996 * 109.47183 * 299.99700 * 9 7 2 24 24 H 1.08993 * 109.47363 * 209.99975 * 12 11 10 25 25 H 1.09003 * 109.47256 * 330.00646 * 12 11 10 26 26 H 1.08009 * 120.05649 * 0.29744 * 16 15 14 27 27 H 1.08001 * 119.66343 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.77372 * 180.02562 * 18 17 16 29 29 H 1.08000 * 120.15788 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 4.2689 -3.3356 1.0955 12 6 4.1078 -2.8802 2.5230 13 17 2.4410 -3.2657 3.0924 14 7 4.6856 -4.5131 0.7314 15 6 4.7118 -4.5890 -0.6241 16 6 5.0680 -5.5949 -1.5263 17 6 4.9860 -5.3642 -2.8702 18 6 4.5510 -4.1379 -3.3527 19 6 4.1947 -3.1308 -2.4814 20 6 4.2729 -3.3466 -1.1121 21 1 -0.4849 0.8401 0.0004 22 1 3.8746 -0.6810 0.8905 23 1 3.8752 -0.6797 -0.8894 24 1 4.8346 -3.3936 3.1524 25 1 4.2720 -1.8042 2.5818 26 1 5.4033 -6.5547 -1.1616 27 1 5.2626 -6.1441 -3.5642 28 1 4.4914 -3.9713 -4.4181 29 1 3.8572 -2.1782 -2.8621 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076041230.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:28 Heat of formation + Delta-G solvation = 58.357105 kcal Electronic energy + Delta-G solvation = -15744.301993 eV Core-core repulsion = 13079.739602 eV Total energy + Delta-G solvation = -2664.562391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.63227 -37.06576 -35.56335 -34.24965 -32.41065 -30.65174 -29.99197 -27.83973 -26.94669 -23.10188 -21.70799 -21.50704 -19.39509 -17.27414 -16.94801 -16.35072 -15.22339 -15.13881 -14.32769 -13.88734 -13.62291 -13.42808 -13.35208 -13.14333 -12.62227 -12.25569 -11.73317 -11.62163 -11.18394 -10.89419 -10.87167 -10.54845 -10.24301 -10.00688 -9.87519 -9.49766 -9.46192 -8.85778 -7.82704 -7.56851 -6.32958 -4.37517 1.27267 1.99448 2.42215 3.06530 3.11759 3.14962 3.33704 3.52327 4.13093 4.29910 4.34920 4.89539 4.93473 5.21104 5.30974 5.37633 5.46965 5.79439 5.81580 5.86825 6.07440 6.25265 6.27871 6.63326 6.87739 6.97185 7.08931 7.16125 7.30341 7.65915 8.19737 8.34686 8.74047 9.21202 10.79269 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.009598 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.054098 B = 2916.625782 C = 3986.651160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.208 3.792 10 N -0.443 5.443 11 C 0.264 3.736 12 C 0.047 3.953 13 Cl -0.142 7.142 14 N -0.494 5.494 15 C 0.040 3.960 16 C -0.071 4.071 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.094 4.094 20 C 0.061 3.939 21 H 0.269 0.731 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 -4.248 -0.603 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.121 4.121 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.102 0.898 9 C 0.088 3.912 10 N -0.128 5.128 11 C -0.001 4.001 12 C -0.018 4.018 13 Cl -0.116 7.116 14 N -0.216 5.216 15 C -0.081 4.081 16 C -0.090 4.090 17 C -0.157 4.157 18 C -0.137 4.137 19 C -0.114 4.114 20 C -0.052 4.052 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.881 -4.607 0.015 10.902 hybrid contribution -0.159 1.698 -0.547 1.791 sum 9.722 -2.909 -0.531 10.161 Atomic orbital electron populations 1.69865 1.06121 1.27380 1.48215 1.24780 0.94753 0.98597 0.93991 0.86980 0.80340 0.84168 0.79050 1.19698 1.20396 1.19036 1.21066 0.87368 0.95703 1.53693 0.89753 1.20149 0.97486 0.74922 0.98664 1.45553 1.49164 1.14191 1.03859 1.22881 0.99084 0.87734 0.90403 1.22354 0.87328 1.03517 0.88554 1.98762 1.27659 1.95659 1.89472 1.70294 1.23039 1.17225 1.11068 1.19034 1.05007 0.93928 0.90119 1.19862 1.00347 0.97260 0.91552 1.20500 1.03023 0.97488 0.94648 1.20769 1.00903 0.93128 0.98866 1.20066 1.01799 1.00360 0.89199 1.18910 1.03819 0.92663 0.89776 0.92058 0.93695 0.94045 0.86278 0.87111 0.86050 0.86050 0.85864 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.43 0.77 -24.55 15 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 15 3 Si 0.87 19.27 27.47 -169.99 -4.67 14.60 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -5.49 6.54 56.52 0.37 -5.12 15 7 C -0.54 -14.20 9.94 -34.44 -0.34 -14.55 15 8 H 0.08 2.56 8.06 -52.49 -0.42 2.14 15 9 C 0.21 4.59 4.75 -5.19 -0.02 4.56 15 10 N -0.44 -9.43 2.79 -112.44 -0.31 -9.74 15 11 C 0.26 5.23 7.23 -154.83 -1.12 4.11 15 12 C 0.05 0.76 6.95 36.01 0.25 1.01 15 13 Cl -0.14 -2.64 29.13 -51.86 -1.51 -4.15 15 14 N -0.49 -10.08 11.27 -8.24 -0.09 -10.17 15 15 C 0.04 0.79 7.23 -84.70 -0.61 0.18 15 16 C -0.07 -1.16 10.05 -39.61 -0.40 -1.56 15 17 C -0.14 -1.94 9.96 -39.97 -0.40 -2.34 15 18 C -0.12 -1.74 10.03 -39.52 -0.40 -2.14 15 19 C -0.09 -1.70 10.05 -39.50 -0.40 -2.09 15 20 C 0.06 1.25 6.88 -83.98 -0.58 0.67 15 21 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.05 0.94 6.05 -51.93 -0.31 0.62 15 23 H 0.04 0.89 7.57 -51.93 -0.39 0.49 15 24 H 0.12 1.54 8.14 -51.93 -0.42 1.12 15 25 H 0.11 1.63 7.01 -51.93 -0.36 1.27 15 26 H 0.12 1.73 8.06 -52.48 -0.42 1.30 15 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 29 H 0.12 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -30.28 271.28 -8.61 -38.89 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.77 Total: 1.03 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -4.11 Total: -10.00 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.37 Total: -44.46 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -1.51 Total: -4.15 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.28 -8.61 -38.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076041230.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.247 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds