Wall clock time and date at job start Mon Mar 30 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00336 * 2 1 4 4 H 1.48493 * 109.47229 * 270.00303 * 3 2 1 5 5 H 1.48502 * 109.46774 * 30.00109 * 3 2 1 6 6 H 1.48498 * 109.47134 * 149.99969 * 3 2 1 7 7 C 1.37881 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99778 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.36036 * 126.35074 * 269.95691 * 10 9 7 12 12 C 1.50700 * 124.94888 * 0.02562 * 11 10 9 13 13 Cl 1.80307 * 109.47093 * 90.00183 * 12 11 10 14 14 N 1.30106 * 110.10195 * 180.02562 * 11 10 9 15 15 C 1.35787 * 109.64359 * 359.97438 * 14 11 10 16 16 C 1.39734 * 133.60143 * 179.97438 * 15 14 11 17 17 C 1.36605 * 119.88806 * 180.02562 * 16 15 14 18 18 C 1.38776 * 120.66622 * 359.97438 * 17 16 15 19 19 C 1.37851 * 120.45485 * 0.03810 * 18 17 16 20 20 C 1.38058 * 126.34607 * 89.99869 * 10 9 7 21 21 H 0.96995 * 119.99452 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47232 * 60.00468 * 9 7 2 23 23 H 1.08996 * 109.47183 * 299.99700 * 9 7 2 24 24 H 1.08993 * 109.47363 * 209.99975 * 12 11 10 25 25 H 1.09003 * 109.47256 * 330.00646 * 12 11 10 26 26 H 1.08009 * 120.05649 * 0.29744 * 16 15 14 27 27 H 1.08001 * 119.66343 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.77372 * 180.02562 * 18 17 16 29 29 H 1.08000 * 120.15788 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 4.2689 -3.3356 1.0955 12 6 4.1078 -2.8802 2.5230 13 17 2.4410 -3.2657 3.0924 14 7 4.6856 -4.5131 0.7314 15 6 4.7118 -4.5890 -0.6241 16 6 5.0680 -5.5949 -1.5263 17 6 4.9860 -5.3642 -2.8702 18 6 4.5510 -4.1379 -3.3527 19 6 4.1947 -3.1308 -2.4814 20 6 4.2729 -3.3466 -1.1121 21 1 -0.4849 0.8401 0.0004 22 1 3.8746 -0.6810 0.8905 23 1 3.8752 -0.6797 -0.8894 24 1 4.8346 -3.3936 3.1524 25 1 4.2720 -1.8042 2.5818 26 1 5.4033 -6.5547 -1.1616 27 1 5.2626 -6.1441 -3.5642 28 1 4.4914 -3.9713 -4.4181 29 1 3.8572 -2.1782 -2.8621 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076041230.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:28 Heat of formation + Delta-G solvation = 40.724475 kcal Electronic energy + Delta-G solvation = -15745.066601 eV Core-core repulsion = 13079.739602 eV Total energy + Delta-G solvation = -2665.326999 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.06913 -38.37912 -36.95693 -35.95886 -34.26732 -32.01002 -31.39478 -29.57736 -28.26428 -24.91613 -23.04998 -22.90734 -20.89476 -19.25302 -18.29591 -17.90932 -16.75831 -16.43272 -16.08422 -15.22467 -15.07673 -14.78766 -14.72576 -14.62505 -14.33383 -13.91228 -13.40289 -12.83905 -12.69422 -12.48797 -12.30688 -12.13383 -11.83213 -11.66021 -11.39592 -11.11533 -10.98880 -10.86151 -9.22024 -8.96878 -8.37240 -6.47856 -0.08198 0.66610 1.07137 1.33969 1.34715 1.43804 1.84750 2.10700 2.26015 2.94279 2.95607 3.00337 3.50038 3.97709 4.06184 4.17128 4.22140 4.27398 4.51732 4.54365 4.56852 4.83235 4.93202 5.21464 5.32324 5.59620 5.61830 5.69816 5.96392 6.04133 6.31819 6.57966 6.87104 7.15546 8.79198 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.009598 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.054098 B = 2916.625782 C = 3986.651160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.235 1.235 7 C -0.536 4.536 8 H 0.027 0.973 9 C 0.216 3.784 10 N -0.459 5.459 11 C 0.250 3.750 12 C 0.050 3.950 13 Cl -0.168 7.168 14 N -0.507 5.507 15 C 0.011 3.989 16 C -0.080 4.080 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.124 4.124 20 C 0.029 3.971 21 H 0.271 0.729 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.153 0.847 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.161 0.839 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.390 -4.158 -1.713 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.158 1.158 7 C -0.574 4.574 8 H 0.045 0.955 9 C 0.096 3.904 10 N -0.146 5.146 11 C -0.015 4.015 12 C -0.014 4.014 13 Cl -0.142 7.142 14 N -0.229 5.229 15 C -0.109 4.109 16 C -0.099 4.099 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.145 4.145 20 C -0.082 4.082 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.171 0.829 25 H 0.145 0.855 26 H 0.160 0.840 27 H 0.185 0.815 28 H 0.179 0.821 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.281 -4.556 -1.102 13.145 hybrid contribution -0.890 1.483 -0.332 1.761 sum 11.391 -3.073 -1.433 11.885 Atomic orbital electron populations 1.70037 1.08417 1.28610 1.50239 1.25725 0.95490 1.02886 0.93265 0.85828 0.79915 0.78300 0.79707 1.18803 1.20553 1.15824 1.21059 0.89668 0.93506 1.53205 0.95492 1.19932 0.94428 0.76275 0.99783 1.45532 1.50231 1.14042 1.04749 1.23451 0.99045 0.87665 0.91343 1.22717 0.86292 1.04976 0.87379 1.98759 1.30000 1.95839 1.89578 1.70266 1.23506 1.17448 1.11715 1.19565 1.06181 0.94814 0.90341 1.20294 1.00075 0.97385 0.92159 1.21031 1.00605 0.98105 0.94443 1.21284 0.97973 0.92268 1.00320 1.20328 1.03711 1.01567 0.88865 1.19415 1.04949 0.93229 0.90653 0.91970 0.91727 0.92996 0.82876 0.85507 0.84005 0.81526 0.82100 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.45 0.30 -55.33 15 2 C 0.03 1.42 5.47 84.66 0.46 1.89 15 3 Si 0.94 39.14 27.47 68.60 1.88 41.03 15 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 15 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.24 -8.57 6.54 99.48 0.65 -7.92 15 7 C -0.54 -28.96 9.94 25.60 0.25 -28.70 15 8 H 0.03 1.73 8.06 -2.91 -0.02 1.70 15 9 C 0.22 9.47 4.75 85.63 0.41 9.88 15 10 N -0.46 -19.65 2.79 -509.63 -1.42 -21.07 15 11 C 0.25 9.89 7.23 137.92 1.00 10.89 15 12 C 0.05 1.59 6.95 71.24 0.49 2.09 15 13 Cl -0.17 -6.33 29.13 -2.72 -0.08 -6.41 15 14 N -0.51 -20.62 11.27 -179.97 -2.03 -22.65 15 15 C 0.01 0.42 7.23 39.45 0.29 0.71 15 16 C -0.08 -2.44 10.05 22.25 0.22 -2.22 15 17 C -0.12 -3.01 9.96 22.02 0.22 -2.79 15 18 C -0.10 -2.65 10.03 22.31 0.22 -2.43 15 19 C -0.12 -4.39 10.05 22.32 0.22 -4.16 15 20 C 0.03 1.18 6.88 38.86 0.27 1.44 15 21 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 22 H 0.06 2.56 6.05 -2.39 -0.01 2.55 15 23 H 0.05 2.16 7.57 -2.39 -0.02 2.14 15 24 H 0.15 3.70 8.14 -2.39 -0.02 3.68 15 25 H 0.13 3.55 7.01 -2.39 -0.02 3.53 15 26 H 0.14 3.66 8.06 -2.91 -0.02 3.64 15 27 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 28 H 0.16 3.06 8.06 -2.91 -0.02 3.03 15 29 H 0.12 4.18 8.06 -2.91 -0.02 4.15 15 Total: -1.00 -69.14 271.28 3.82 -65.32 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.11 Total: 12.54 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.06 Total: -13.42 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.15 Total: -99.05 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.03 kcal Atomic # 17 Polarization: -6.33 SS G_CDS: -0.08 Total: -6.41 kcal Total: -69.14 3.82 -65.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076041230.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.046 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds