Wall clock time and date at job start Mon Mar 30 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32030 * 125.93949 * 2 1 4 4 C 1.33422 * 110.01468 * 180.02562 * 3 2 1 5 5 C 1.40362 * 131.71376 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.27018 * 0.07085 * 5 4 3 7 7 C 1.36565 * 119.46464 * 180.02562 * 5 4 3 8 8 C 1.40220 * 119.69151 * 0.02562 * 7 5 4 9 9 Cl 1.73599 * 119.95269 * 180.02562 * 8 7 5 10 10 C 1.35465 * 120.09977 * 0.20927 * 8 7 5 11 11 N 1.36283 * 120.55341 * 359.57694 * 10 8 7 12 12 C 1.38480 * 132.42868 * 180.10778 * 11 10 8 13 13 C 1.39819 * 126.89754 * 0.28451 * 12 11 10 14 14 H 1.07999 * 120.00122 * 213.21328 * 13 12 11 15 15 C 1.39872 * 119.99788 * 33.21900 * 13 12 11 16 16 N 1.31031 * 120.00185 * 19.79164 * 15 13 12 17 17 Si 1.86801 * 119.99725 * 199.79428 * 15 13 12 18 18 H 1.48491 * 109.47115 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47107 * 120.00142 * 17 15 13 20 20 H 1.48505 * 109.46854 * 239.99889 * 17 15 13 21 21 H 1.08995 * 109.47185 * 268.43563 * 1 2 3 22 22 H 1.09003 * 109.47499 * 28.44258 * 1 2 3 23 23 H 1.09006 * 109.46701 * 148.44019 * 1 2 3 24 24 H 1.08995 * 109.47363 * 89.99800 * 6 5 4 25 25 H 1.08996 * 109.46883 * 209.99885 * 6 5 4 26 26 H 1.08997 * 109.46932 * 329.99473 * 6 5 4 27 27 H 1.07994 * 120.15216 * 179.97438 * 7 5 4 28 28 H 1.07994 * 119.72344 * 179.71200 * 10 8 7 29 29 H 0.96996 * 120.00379 * 174.92821 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0690 0.0000 4 6 3.5649 0.7029 -0.0006 5 6 4.7506 1.4542 -0.0013 6 6 4.6956 2.9602 0.0001 7 6 5.9544 0.8094 -0.0023 8 6 5.9915 -0.5923 -0.0031 9 17 7.5181 -1.4189 -0.0037 10 6 4.8380 -1.3025 -0.0073 11 7 3.6328 -0.6663 -0.0019 12 6 2.3294 -1.1341 -0.0023 13 6 1.9170 -2.4701 -0.0032 14 1 1.0100 -2.7549 -0.5158 15 6 2.6790 -3.4376 0.6598 16 7 3.5342 -3.0773 1.5849 17 14 2.4774 -5.2434 0.2265 18 1 1.4557 -5.3851 -0.8417 19 1 3.7742 -5.7851 -0.2532 20 1 2.0417 -5.9957 1.4305 21 1 -0.3633 -0.0281 1.0272 22 1 -0.3634 0.9036 -0.4895 23 1 -0.3633 -0.8757 -0.5379 24 1 4.6834 3.3224 1.0281 25 1 5.5711 3.3561 -0.5143 26 1 3.7924 3.2912 -0.5125 27 1 6.8735 1.3764 -0.0032 28 1 4.8737 -2.3818 -0.0126 29 1 4.0087 -3.7515 2.0958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:53 Heat of formation + Delta-G solvation = 53.025427 kcal Electronic energy + Delta-G solvation = -16004.747393 eV Core-core repulsion = 13339.953803 eV Total energy + Delta-G solvation = -2664.793589 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13278 -36.82022 -35.51693 -34.29691 -32.86491 -30.51653 -29.46138 -27.28348 -26.02741 -24.71544 -21.54337 -20.99875 -19.15838 -17.72540 -16.09893 -15.58186 -15.27656 -14.77970 -14.57062 -13.48736 -13.27260 -12.79929 -12.35869 -12.27040 -12.02772 -11.90202 -11.70952 -11.66180 -11.44699 -11.17393 -11.03168 -10.88301 -10.51869 -10.27777 -9.87149 -9.59171 -9.20004 -8.77916 -7.38381 -7.10306 -6.66102 -4.46253 1.77511 2.31896 2.65870 2.89602 2.97237 3.02494 3.76256 3.89291 4.22369 4.59034 4.82000 5.30434 5.52055 5.72915 5.86837 6.03898 6.13268 6.19389 6.33131 6.51945 6.60237 6.66639 6.81064 6.81716 6.96639 6.98730 7.18458 7.46488 7.68159 8.11253 8.29149 8.51186 8.70251 9.31667 9.95989 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.016900 B = 0.011721 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.433946 B = 2388.387951 C = 3914.234969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.070 4.070 3 N -0.463 5.463 4 C 0.114 3.886 5 C -0.020 4.020 6 C -0.093 4.093 7 C -0.156 4.156 8 C -0.104 4.104 9 Cl -0.082 7.082 10 C 0.143 3.857 11 N -0.374 5.374 12 C 0.190 3.810 13 C -0.449 4.449 14 H 0.102 0.898 15 C 0.067 3.933 16 N -0.808 5.808 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.272 1.272 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 1.381 -2.105 4.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.204 4.204 3 N -0.182 5.182 4 C -0.122 4.122 5 C -0.023 4.023 6 C -0.151 4.151 7 C -0.179 4.179 8 C -0.135 4.135 9 Cl -0.054 7.054 10 C 0.019 3.981 11 N -0.052 5.052 12 C 0.079 3.921 13 C -0.484 4.484 14 H 0.120 0.880 15 C -0.150 4.150 16 N -0.436 5.436 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.197 1.197 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.175 0.825 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.214 2.066 -1.986 4.306 hybrid contribution 0.632 -1.973 0.196 2.081 sum 3.846 0.093 -1.790 4.244 Atomic orbital electron populations 1.19640 0.88590 1.00585 1.00552 1.20988 0.95208 0.87635 1.16611 1.69630 0.98497 1.31146 1.18940 1.19794 0.93156 0.81098 1.18110 1.18535 0.88851 0.95308 0.99618 1.20509 1.02311 0.90333 1.01907 1.20186 0.97061 0.91500 1.09151 1.19624 0.85405 0.92246 1.16216 1.98282 1.30163 1.79221 1.97746 1.21253 0.82370 0.98625 0.95836 1.42510 1.05032 1.07393 1.50282 1.18656 0.78963 0.94750 0.99758 1.18522 1.09322 0.89045 1.31531 0.88050 1.25957 0.93455 1.02188 0.93383 1.69860 1.21458 1.37103 1.15170 0.86156 0.79549 0.80911 0.79740 1.18097 1.19542 1.19715 0.93077 0.93117 0.92184 0.91589 0.92122 0.90943 0.85708 0.82498 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.72 10.24 36.01 0.37 -0.35 15 2 C -0.07 -1.74 7.20 -81.81 -0.59 -2.32 15 3 N -0.46 -11.70 11.18 -8.10 -0.09 -11.79 15 4 C 0.11 2.82 7.48 -155.51 -1.16 1.66 15 5 C -0.02 -0.43 5.90 -104.43 -0.62 -1.04 15 6 C -0.09 -1.55 10.01 36.01 0.36 -1.19 15 7 C -0.16 -3.05 9.52 -39.44 -0.38 -3.43 15 8 C -0.10 -2.17 6.29 -39.83 -0.25 -2.42 15 9 Cl -0.08 -1.46 28.95 -51.86 -1.50 -2.96 15 10 C 0.14 3.37 9.03 -16.56 -0.15 3.23 15 11 N -0.37 -9.55 2.90 -59.99 -0.17 -9.73 15 12 C 0.19 4.96 6.26 -83.58 -0.52 4.43 15 13 C -0.45 -11.15 8.92 -38.38 -0.34 -11.49 15 14 H 0.10 2.37 7.67 -52.49 -0.40 1.97 15 15 C 0.07 1.58 4.52 -17.28 -0.08 1.50 15 16 N -0.81 -19.91 10.56 55.55 0.59 -19.33 15 17 Si 0.91 17.65 29.61 -169.99 -5.03 12.62 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.06 1.12 7.77 -51.93 -0.40 0.71 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.06 0.83 8.09 -51.93 -0.42 0.41 15 26 H 0.07 1.25 8.07 -51.93 -0.42 0.83 15 27 H 0.12 2.06 8.06 -52.49 -0.42 1.64 15 28 H 0.16 3.74 6.02 -52.49 -0.32 3.43 15 29 H 0.29 6.49 8.31 -40.82 -0.34 6.15 15 LS Contribution 268.28 15.07 4.04 4.04 Total: -1.00 -27.56 268.28 -8.31 -35.87 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.79 Total: 2.70 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.36 Total: -11.43 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.32 Total: -40.84 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.50 Total: -2.96 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.56 -8.31 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds