Wall clock time and date at job start Mon Mar 30 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32030 * 125.93949 * 2 1 4 4 C 1.33422 * 110.01468 * 180.02562 * 3 2 1 5 5 C 1.40362 * 131.71376 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.27018 * 0.07085 * 5 4 3 7 7 C 1.36565 * 119.46464 * 180.02562 * 5 4 3 8 8 C 1.40220 * 119.69151 * 0.02562 * 7 5 4 9 9 Cl 1.73599 * 119.95269 * 180.02562 * 8 7 5 10 10 C 1.35465 * 120.09977 * 0.20927 * 8 7 5 11 11 N 1.36283 * 120.55341 * 359.57694 * 10 8 7 12 12 C 1.38480 * 132.42868 * 180.10778 * 11 10 8 13 13 C 1.39819 * 126.89754 * 0.28451 * 12 11 10 14 14 H 1.07999 * 120.00122 * 213.21328 * 13 12 11 15 15 C 1.39872 * 119.99788 * 33.21900 * 13 12 11 16 16 N 1.31031 * 120.00185 * 19.79164 * 15 13 12 17 17 Si 1.86801 * 119.99725 * 199.79428 * 15 13 12 18 18 H 1.48491 * 109.47115 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47107 * 120.00142 * 17 15 13 20 20 H 1.48505 * 109.46854 * 239.99889 * 17 15 13 21 21 H 1.08995 * 109.47185 * 268.43563 * 1 2 3 22 22 H 1.09003 * 109.47499 * 28.44258 * 1 2 3 23 23 H 1.09006 * 109.46701 * 148.44019 * 1 2 3 24 24 H 1.08995 * 109.47363 * 89.99800 * 6 5 4 25 25 H 1.08996 * 109.46883 * 209.99885 * 6 5 4 26 26 H 1.08997 * 109.46932 * 329.99473 * 6 5 4 27 27 H 1.07994 * 120.15216 * 179.97438 * 7 5 4 28 28 H 1.07994 * 119.72344 * 179.71200 * 10 8 7 29 29 H 0.96996 * 120.00379 * 174.92821 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0690 0.0000 4 6 3.5649 0.7029 -0.0006 5 6 4.7506 1.4542 -0.0013 6 6 4.6956 2.9602 0.0001 7 6 5.9544 0.8094 -0.0023 8 6 5.9915 -0.5923 -0.0031 9 17 7.5181 -1.4189 -0.0037 10 6 4.8380 -1.3025 -0.0073 11 7 3.6328 -0.6663 -0.0019 12 6 2.3294 -1.1341 -0.0023 13 6 1.9170 -2.4701 -0.0032 14 1 1.0100 -2.7549 -0.5158 15 6 2.6790 -3.4376 0.6598 16 7 3.5342 -3.0773 1.5849 17 14 2.4774 -5.2434 0.2265 18 1 1.4557 -5.3851 -0.8417 19 1 3.7742 -5.7851 -0.2532 20 1 2.0417 -5.9957 1.4305 21 1 -0.3633 -0.0281 1.0272 22 1 -0.3634 0.9036 -0.4895 23 1 -0.3633 -0.8757 -0.5379 24 1 4.6834 3.3224 1.0281 25 1 5.5711 3.3561 -0.5143 26 1 3.7924 3.2912 -0.5125 27 1 6.8735 1.3764 -0.0032 28 1 4.8737 -2.3818 -0.0126 29 1 4.0087 -3.7515 2.0958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082693469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:52 Heat of formation + Delta-G solvation = 39.348856 kcal Electronic energy + Delta-G solvation = -16005.340453 eV Core-core repulsion = 13339.953803 eV Total energy + Delta-G solvation = -2665.386650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.91998 -38.47733 -37.10931 -36.06066 -34.55497 -32.20780 -31.19419 -28.95945 -27.62449 -26.46181 -23.30899 -22.67511 -20.95330 -19.50837 -17.82695 -17.32639 -16.97127 -16.42920 -16.32095 -15.17600 -14.92426 -14.29056 -13.86947 -13.76323 -13.70537 -13.55973 -13.30106 -13.16824 -13.01377 -12.86452 -12.58391 -12.46037 -12.05753 -11.84755 -11.59679 -11.28992 -10.85823 -10.63290 -9.16103 -8.86851 -8.43522 -6.30700 0.06298 0.60532 1.02508 1.34232 1.38807 1.52992 2.09750 2.18091 2.46070 2.82566 2.99876 3.66279 3.90415 4.08816 4.35206 4.42285 4.68366 4.74485 4.86467 5.00812 5.04018 5.08200 5.11940 5.20871 5.23824 5.36099 5.54408 5.70923 5.92430 6.29426 6.48810 6.70897 6.89160 7.46773 8.22628 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.016900 B = 0.011721 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.433946 B = 2388.387951 C = 3914.234969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.094 4.094 3 N -0.485 5.485 4 C 0.095 3.905 5 C -0.034 4.034 6 C -0.087 4.087 7 C -0.145 4.145 8 C -0.093 4.093 9 Cl -0.051 7.051 10 C 0.107 3.893 11 N -0.382 5.382 12 C 0.150 3.850 13 C -0.475 4.475 14 H 0.105 0.895 15 C 0.033 3.967 16 N -0.840 5.840 17 Si 0.983 3.017 18 H -0.252 1.252 19 H -0.267 1.267 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 1.569 -2.369 5.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.228 4.228 3 N -0.205 5.205 4 C -0.141 4.141 5 C -0.037 4.037 6 C -0.144 4.144 7 C -0.168 4.168 8 C -0.124 4.124 9 Cl -0.023 7.023 10 C -0.016 4.016 11 N -0.060 5.060 12 C 0.039 3.961 13 C -0.510 4.510 14 H 0.123 0.877 15 C -0.181 4.181 16 N -0.468 5.468 17 Si 0.803 3.197 18 H -0.176 1.176 19 H -0.192 1.192 20 H -0.191 1.191 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.584 2.260 -2.251 5.585 hybrid contribution 0.377 -1.944 0.283 2.001 sum 4.961 0.315 -1.968 5.346 Atomic orbital electron populations 1.19686 0.86082 1.01789 1.01205 1.21723 0.97104 0.87475 1.16498 1.69629 0.99011 1.31398 1.20421 1.20631 0.94314 0.81468 1.17735 1.19144 0.87927 0.97523 0.99112 1.20567 1.03562 0.87261 1.03005 1.20651 0.98189 0.91022 1.06910 1.19936 0.85999 0.93155 1.13321 1.98293 1.27657 1.78837 1.97479 1.21317 0.82854 0.98565 0.98898 1.42675 1.05445 1.07862 1.50047 1.19123 0.79724 0.95768 1.01522 1.18753 1.10263 0.89409 1.32563 0.87714 1.26731 0.92696 1.06102 0.92572 1.69923 1.22305 1.38547 1.16048 0.85115 0.79537 0.75463 0.79562 1.17550 1.19198 1.19105 0.92565 0.91614 0.91194 0.90426 0.88421 0.92010 0.81673 0.83606 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.21 10.24 71.24 0.73 -0.48 15 2 C -0.09 -4.80 7.20 42.98 0.31 -4.49 15 3 N -0.48 -24.93 11.18 -179.55 -2.01 -26.94 15 4 C 0.09 4.73 7.48 133.70 1.00 5.73 15 5 C -0.03 -1.39 5.90 -19.74 -0.12 -1.50 15 6 C -0.09 -2.66 10.01 71.24 0.71 -1.95 15 7 C -0.14 -5.28 9.52 22.36 0.21 -5.07 15 8 C -0.09 -3.75 6.29 22.11 0.14 -3.61 15 9 Cl -0.05 -1.69 28.95 -2.72 -0.08 -1.77 15 10 C 0.11 5.10 9.03 83.36 0.75 5.85 15 11 N -0.38 -19.95 2.90 -343.71 -1.00 -20.95 15 12 C 0.15 8.08 6.26 38.92 0.24 8.32 15 13 C -0.48 -24.25 8.92 23.05 0.21 -24.05 15 14 H 0.11 5.04 7.67 -2.91 -0.02 5.01 15 15 C 0.03 1.57 4.52 85.21 0.39 1.95 15 16 N -0.84 -42.19 10.56 21.83 0.23 -41.96 15 17 Si 0.98 36.31 29.61 68.60 2.03 38.34 15 18 H -0.25 -9.00 7.11 99.48 0.71 -8.30 15 19 H -0.27 -9.63 7.11 99.48 0.71 -8.93 15 20 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 21 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.06 2.40 8.14 -2.39 -0.02 2.39 15 23 H 0.07 2.63 7.77 -2.38 -0.02 2.62 15 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.10 2.25 8.09 -2.39 -0.02 2.23 15 26 H 0.06 2.03 8.07 -2.39 -0.02 2.01 15 27 H 0.17 4.66 8.06 -2.91 -0.02 4.63 15 28 H 0.15 7.12 6.02 -2.91 -0.02 7.10 15 29 H 0.29 13.38 8.31 -92.71 -0.77 12.61 15 Total: -1.00 -60.58 268.28 4.93 -55.66 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.17 Total: 16.91 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.57 Total: -19.29 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.77 Total: -89.85 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -60.58 4.93 -55.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.008 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds