Wall clock time and date at job start Mon Mar 30 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86793 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47429 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.47225 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47110 * 149.99895 * 3 2 1 7 7 C 1.38993 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.37313 * 120.00475 * 0.02562 * 7 2 1 10 10 C 1.37206 * 126.56013 * 332.68597 * 9 7 2 11 11 C 1.34868 * 107.04091 * 180.22935 * 10 9 7 12 12 N 1.33899 * 108.53685 * 359.57007 * 11 10 9 13 13 C 1.31520 * 109.33902 * 0.43913 * 12 11 10 14 14 C 1.47703 * 125.89677 * 179.70994 * 13 12 11 15 15 C 1.39678 * 120.11352 * 340.87687 * 14 13 12 16 16 C 1.37888 * 119.91925 * 179.97438 * 15 14 13 17 17 C 1.38582 * 120.15026 * 0.02562 * 16 15 14 18 18 F 1.35098 * 119.87941 * 179.97438 * 17 16 15 19 19 C 1.38803 * 120.22997 * 359.97438 * 17 16 15 20 20 F 1.35108 * 119.95808 * 180.02562 * 19 17 16 21 21 C 1.38090 * 120.08427 * 359.74152 * 19 17 16 22 22 H 0.97003 * 120.00192 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.47960 * 359.96515 * 10 9 7 24 24 H 1.07995 * 125.72865 * 179.73490 * 11 10 9 25 25 H 1.08000 * 120.03808 * 359.95855 * 15 14 13 26 26 H 1.07994 * 119.92748 * 180.02562 * 16 15 14 27 27 H 1.07999 * 120.08140 * 180.25727 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.4946 2.0464 -1.4000 5 1 1.4446 2.6526 0.7001 6 1 3.5446 1.4400 0.7001 7 6 2.0079 -1.2038 -0.0005 8 1 3.0880 -1.2039 -0.0001 9 7 1.3214 -2.3929 -0.0016 10 6 0.0646 -2.6115 0.5035 11 6 -0.2221 -3.9136 0.3003 12 7 0.8172 -4.4866 -0.3197 13 6 1.7603 -3.5895 -0.5084 14 6 3.0669 -3.8293 -1.1542 15 6 3.5643 -5.1296 -1.2680 16 6 4.7842 -5.3488 -1.8721 17 6 5.5181 -4.2821 -2.3661 18 9 6.7129 -4.5032 -2.9564 19 6 5.0297 -2.9875 -2.2563 20 9 5.7495 -1.9516 -2.7403 21 6 3.8064 -2.7574 -1.6584 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5728 -1.8802 0.9782 24 1 -1.1374 -4.4100 0.5869 25 1 2.9941 -5.9621 -0.8830 26 1 5.1687 -6.3541 -1.9604 27 1 3.4246 -1.7505 -1.5768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082739108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:12 Heat of formation + Delta-G solvation = -11.993818 kcal Electronic energy + Delta-G solvation = -17456.543174 eV Core-core repulsion = 14237.133458 eV Total energy + Delta-G solvation = -3219.409716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.08762 -48.16467 -40.62665 -38.10692 -34.25689 -31.48863 -30.80493 -30.22144 -27.13322 -25.57873 -22.90181 -22.57890 -20.37011 -19.47351 -18.33287 -17.25709 -16.73122 -16.33405 -15.92363 -15.58285 -14.65650 -14.60452 -14.07657 -13.94890 -13.77536 -13.49675 -12.79127 -12.67698 -12.15620 -12.07787 -11.70976 -11.63238 -11.42566 -11.26915 -10.72173 -10.60851 -9.79980 -8.82581 -8.76794 -8.52232 -8.49896 -7.08630 -6.76345 -4.77984 1.18189 1.43446 2.81254 2.91507 2.95836 3.33050 3.65031 3.91156 4.16040 4.43007 4.59505 4.68460 4.73901 4.96163 5.25800 5.49333 5.66785 6.01813 6.15075 6.32822 6.40172 6.55881 6.60495 6.83600 6.91616 7.12866 7.15926 7.32446 7.97976 8.09778 8.47509 9.12509 9.39483 10.01210 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.008990 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.508807 B = 3113.836921 C = 4434.080792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.053 3.947 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.352 4.352 8 H 0.118 0.882 9 N -0.245 5.245 10 C -0.030 4.030 11 C -0.077 4.077 12 N -0.493 5.493 13 C 0.112 3.888 14 C 0.065 3.935 15 C -0.088 4.088 16 C -0.125 4.125 17 C 0.037 3.963 18 F -0.140 7.140 19 C 0.070 3.930 20 F -0.135 7.135 21 C -0.140 4.140 22 H 0.285 0.715 23 H 0.173 0.827 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -2.619 -1.272 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.160 4.160 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.135 0.865 9 N 0.090 4.910 10 C -0.175 4.175 11 C -0.232 4.232 12 N -0.214 5.214 13 C -0.137 4.137 14 C 0.063 3.937 15 C -0.108 4.108 16 C -0.144 4.144 17 C 0.016 3.984 18 F -0.119 7.119 19 C 0.050 3.950 20 F -0.114 7.114 21 C -0.160 4.160 22 H 0.095 0.905 23 H 0.190 0.810 24 H 0.167 0.833 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.530 -3.113 -1.575 6.539 hybrid contribution 0.398 1.902 0.035 1.944 sum 5.928 -1.211 -1.540 6.244 Atomic orbital electron populations 1.69838 1.06548 1.29580 1.39822 1.25658 0.95812 1.00889 0.93684 0.85743 0.79618 0.79072 0.79574 1.19063 1.19725 1.18343 1.20104 0.93006 0.81405 1.53580 0.86475 1.41533 1.11549 1.06933 1.30973 1.22830 0.90196 0.97389 1.07041 1.21835 0.99259 0.92703 1.09451 1.70004 1.01041 1.31336 1.19068 1.20570 0.96671 0.84421 1.12044 1.17407 0.89971 0.92156 0.94151 1.21098 0.94231 0.96961 0.98500 1.20860 0.95318 0.97925 1.00280 1.17689 0.84273 0.92844 1.03591 1.91459 1.42997 1.95396 1.81999 1.17503 0.92558 0.82681 1.02270 1.91487 1.77103 1.56706 1.86061 1.21798 0.92457 1.03022 0.98703 0.90456 0.81032 0.83289 0.83738 0.84119 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.09 10.98 55.50 0.61 -19.48 15 2 C 0.05 1.22 5.45 -17.50 -0.10 1.13 15 3 Si 0.94 17.82 29.55 -169.99 -5.02 12.79 15 4 H -0.27 -5.05 7.11 56.52 0.40 -4.64 15 5 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.35 -8.53 8.17 -14.82 -0.12 -8.65 15 8 H 0.12 2.68 5.88 -52.48 -0.31 2.38 15 9 N -0.25 -6.16 2.93 -59.45 -0.17 -6.33 15 10 C -0.03 -0.73 10.13 -16.34 -0.17 -0.90 15 11 C -0.08 -1.78 11.83 -17.85 -0.21 -2.00 15 12 N -0.49 -11.81 11.02 -11.06 -0.12 -11.93 15 13 C 0.11 2.68 7.57 -154.00 -1.17 1.51 15 14 C 0.07 1.35 5.86 -104.97 -0.61 0.73 15 15 C -0.09 -1.52 9.69 -39.17 -0.38 -1.90 15 16 C -0.12 -1.89 10.01 -39.58 -0.40 -2.28 15 17 C 0.04 0.61 7.31 -39.25 -0.29 0.33 15 18 F -0.14 -2.29 17.17 2.25 0.04 -2.26 15 19 C 0.07 1.28 7.30 -39.43 -0.29 0.99 15 20 F -0.13 -2.47 17.18 2.25 0.04 -2.43 15 21 C -0.14 -2.76 8.71 -39.11 -0.34 -3.10 15 22 H 0.28 6.35 8.31 -40.82 -0.34 6.01 15 23 H 0.17 4.17 6.63 -52.49 -0.35 3.82 15 24 H 0.15 2.92 8.06 -52.49 -0.42 2.50 15 25 H 0.14 2.37 7.95 -52.49 -0.42 1.95 15 26 H 0.14 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.17 3.47 5.05 -52.49 -0.26 3.20 15 LS Contribution 252.08 15.07 3.80 3.80 Total: -1.00 -26.43 252.08 -6.22 -32.65 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -1.32 Total: 7.32 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -4.06 Total: -14.14 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.31 Total: -37.74 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.02 Total: 12.79 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.43 -6.22 -32.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.654 kcal (2) G-P(sol) polarization free energy of solvation -26.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds