Wall clock time and date at job start Mon Mar 30 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86793 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47429 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.47225 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47110 * 149.99895 * 3 2 1 7 7 C 1.38993 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.37313 * 120.00475 * 0.02562 * 7 2 1 10 10 C 1.37206 * 126.56013 * 332.68597 * 9 7 2 11 11 C 1.34868 * 107.04091 * 180.22935 * 10 9 7 12 12 N 1.33899 * 108.53685 * 359.57007 * 11 10 9 13 13 C 1.31520 * 109.33902 * 0.43913 * 12 11 10 14 14 C 1.47703 * 125.89677 * 179.70994 * 13 12 11 15 15 C 1.39678 * 120.11352 * 340.87687 * 14 13 12 16 16 C 1.37888 * 119.91925 * 179.97438 * 15 14 13 17 17 C 1.38582 * 120.15026 * 0.02562 * 16 15 14 18 18 F 1.35098 * 119.87941 * 179.97438 * 17 16 15 19 19 C 1.38803 * 120.22997 * 359.97438 * 17 16 15 20 20 F 1.35108 * 119.95808 * 180.02562 * 19 17 16 21 21 C 1.38090 * 120.08427 * 359.74152 * 19 17 16 22 22 H 0.97003 * 120.00192 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.47960 * 359.96515 * 10 9 7 24 24 H 1.07995 * 125.72865 * 179.73490 * 11 10 9 25 25 H 1.08000 * 120.03808 * 359.95855 * 15 14 13 26 26 H 1.07994 * 119.92748 * 180.02562 * 16 15 14 27 27 H 1.07999 * 120.08140 * 180.25727 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.4946 2.0464 -1.4000 5 1 1.4446 2.6526 0.7001 6 1 3.5446 1.4400 0.7001 7 6 2.0079 -1.2038 -0.0005 8 1 3.0880 -1.2039 -0.0001 9 7 1.3214 -2.3929 -0.0016 10 6 0.0646 -2.6115 0.5035 11 6 -0.2221 -3.9136 0.3003 12 7 0.8172 -4.4866 -0.3197 13 6 1.7603 -3.5895 -0.5084 14 6 3.0669 -3.8293 -1.1542 15 6 3.5643 -5.1296 -1.2680 16 6 4.7842 -5.3488 -1.8721 17 6 5.5181 -4.2821 -2.3661 18 9 6.7129 -4.5032 -2.9564 19 6 5.0297 -2.9875 -2.2563 20 9 5.7495 -1.9516 -2.7403 21 6 3.8064 -2.7574 -1.6584 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5728 -1.8802 0.9782 24 1 -1.1374 -4.4100 0.5869 25 1 2.9941 -5.9621 -0.8830 26 1 5.1687 -6.3541 -1.9604 27 1 3.4246 -1.7505 -1.5768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082739108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:12 Heat of formation + Delta-G solvation = -24.541179 kcal Electronic energy + Delta-G solvation = -17457.087268 eV Core-core repulsion = 14237.133458 eV Total energy + Delta-G solvation = -3219.953810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.48260 -49.55739 -42.40726 -39.55737 -36.04072 -33.17909 -32.42043 -31.67499 -28.83380 -27.38092 -24.37499 -24.06185 -22.14725 -21.15921 -20.04501 -18.67735 -18.31823 -17.77741 -17.33280 -17.22797 -16.24892 -15.99248 -15.69581 -15.47754 -15.36881 -14.95875 -14.46986 -14.29435 -13.78352 -13.73627 -13.22785 -13.14605 -12.97986 -12.87245 -12.19838 -12.14621 -11.51451 -10.62190 -10.37087 -10.23730 -9.95320 -8.84596 -8.52228 -6.62492 -0.27309 0.03534 1.25582 1.34019 1.48333 1.71292 2.05702 2.27859 2.67692 2.74057 2.88294 2.99661 3.27492 3.53537 3.78600 4.11140 4.19987 4.46401 4.78001 4.82686 4.87704 4.94908 5.02337 5.08462 5.21950 5.48101 5.52270 5.75773 6.19027 6.30139 6.67274 7.31725 7.56975 8.27141 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.008990 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.508807 B = 3113.836921 C = 4434.080792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.014 3.986 3 Si 1.002 2.998 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.376 4.376 8 H 0.122 0.878 9 N -0.263 5.263 10 C -0.056 4.056 11 C -0.080 4.080 12 N -0.506 5.506 13 C 0.103 3.897 14 C 0.035 3.965 15 C -0.077 4.077 16 C -0.100 4.100 17 C 0.049 3.951 18 F -0.133 7.133 19 C 0.062 3.938 20 F -0.137 7.137 21 C -0.145 4.145 22 H 0.290 0.710 23 H 0.165 0.835 24 H 0.179 0.821 25 H 0.156 0.844 26 H 0.187 0.813 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -3.471 -1.756 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.195 4.195 3 Si 0.822 3.178 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.504 4.504 8 H 0.140 0.860 9 N 0.072 4.928 10 C -0.200 4.200 11 C -0.235 4.235 12 N -0.227 5.227 13 C -0.147 4.147 14 C 0.033 3.967 15 C -0.097 4.097 16 C -0.119 4.119 17 C 0.029 3.971 18 F -0.112 7.112 19 C 0.042 3.958 20 F -0.116 7.116 21 C -0.165 4.165 22 H 0.100 0.900 23 H 0.182 0.818 24 H 0.196 0.804 25 H 0.174 0.826 26 H 0.204 0.796 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.105 -3.976 -2.052 8.397 hybrid contribution -0.020 2.062 0.129 2.066 sum 7.085 -1.914 -1.923 7.587 Atomic orbital electron populations 1.69914 1.07862 1.30656 1.40487 1.26580 0.96539 1.03703 0.92691 0.84792 0.78548 0.74913 0.79569 1.18854 1.18887 1.17709 1.20449 0.93507 0.81831 1.54658 0.86023 1.41779 1.11885 1.07625 1.31499 1.22921 0.90649 0.98022 1.08389 1.22314 1.00072 0.92327 1.08745 1.70019 1.01386 1.31500 1.19792 1.21276 0.97852 0.84123 1.11454 1.17551 0.89407 0.93890 0.95879 1.21239 0.94898 0.95705 0.97839 1.21218 0.93609 0.99437 0.97605 1.17791 0.84290 0.92460 1.02585 1.91488 1.42622 1.95271 1.81775 1.17523 0.92233 0.83440 1.02647 1.91479 1.76992 1.57048 1.86094 1.21580 0.93205 1.02189 0.99562 0.89960 0.81776 0.80386 0.82645 0.79596 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.61 10.98 21.66 0.24 -42.37 15 2 C 0.01 0.68 5.45 84.95 0.46 1.15 15 3 Si 1.00 36.55 29.55 68.60 2.03 38.58 15 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 5 H -0.26 -9.22 7.11 99.48 0.71 -8.52 15 6 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 7 C -0.38 -18.69 8.17 84.02 0.69 -18.00 15 8 H 0.12 5.73 5.88 -2.91 -0.02 5.71 15 9 N -0.26 -13.54 2.93 -341.99 -1.00 -14.54 15 10 C -0.06 -2.83 10.13 83.08 0.84 -1.99 15 11 C -0.08 -3.71 11.83 83.60 0.99 -2.72 15 12 N -0.51 -24.18 11.02 -188.90 -2.08 -26.26 15 13 C 0.10 4.99 7.57 136.23 1.03 6.02 15 14 C 0.03 1.42 5.86 -20.09 -0.12 1.30 15 15 C -0.08 -2.47 9.69 22.53 0.22 -2.25 15 16 C -0.10 -2.62 10.01 22.27 0.22 -2.39 15 17 C 0.05 1.50 7.31 22.49 0.16 1.66 15 18 F -0.13 -3.88 17.17 44.97 0.77 -3.10 15 19 C 0.06 2.16 7.30 22.37 0.16 2.32 15 20 F -0.14 -4.87 17.18 44.97 0.77 -4.09 15 21 C -0.15 -5.71 8.71 22.57 0.20 -5.51 15 22 H 0.29 13.16 8.31 -92.71 -0.77 12.39 15 23 H 0.17 8.33 6.63 -2.91 -0.02 8.31 15 24 H 0.18 6.88 8.06 -2.91 -0.02 6.85 15 25 H 0.16 4.67 7.95 -2.91 -0.02 4.64 15 26 H 0.19 3.24 8.06 -2.91 -0.02 3.21 15 27 H 0.15 6.37 5.05 -2.91 -0.01 6.36 15 Total: -1.00 -57.03 252.08 6.82 -50.22 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.23 Total: 22.00 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 4.86 Total: -20.42 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.84 Total: -83.17 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.54 Total: -7.20 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -57.03 6.82 -50.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.678 kcal (2) G-P(sol) polarization free energy of solvation -57.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds