Wall clock time and date at job start Mon Mar 30 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31313 * 1 3 3 Si 1.86810 * 119.99625 * 2 1 4 4 H 1.48502 * 109.46980 * 268.45082 * 3 2 1 5 5 H 1.48499 * 109.47084 * 28.45064 * 3 2 1 6 6 H 1.48503 * 109.46928 * 148.45280 * 3 2 1 7 7 C 1.38983 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99831 * 343.65769 * 7 2 1 9 9 N 1.37317 * 119.99688 * 163.66059 * 7 2 1 10 10 C 1.37229 * 126.57024 * 336.03935 * 9 7 2 11 11 C 1.34842 * 107.04939 * 180.02562 * 10 9 7 12 12 N 1.33922 * 108.54475 * 359.74183 * 11 10 9 13 13 C 1.31550 * 109.33655 * 0.43430 * 12 11 10 14 14 C 1.47632 * 125.90034 * 179.82977 * 13 12 11 15 15 C 1.39684 * 120.14120 * 132.65387 * 14 13 12 16 16 C 1.37841 * 119.90265 * 179.97438 * 15 14 13 17 17 C 1.38679 * 120.17781 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.85898 * 180.02562 * 17 16 15 19 19 C 1.38526 * 120.28265 * 0.02562 * 17 16 15 20 20 C 1.38152 * 120.10267 * 359.97438 * 19 17 16 21 21 F 1.35104 * 120.09261 * 179.97438 * 20 19 17 22 22 H 0.97000 * 120.00159 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.47824 * 0.02562 * 10 9 7 24 24 H 1.07998 * 125.72796 * 180.02562 * 11 10 9 25 25 H 1.08006 * 120.05059 * 0.02562 * 15 14 13 26 26 H 1.07998 * 119.91370 * 179.97438 * 16 15 14 27 27 H 1.08010 * 119.94552 * 179.72150 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6179 0.0000 4 1 2.5273 2.0276 -1.3996 5 1 1.4284 2.6620 0.6670 6 1 3.5279 1.4500 0.7325 7 6 2.0081 -1.2036 -0.0005 8 1 1.5009 -2.1201 0.2622 9 7 3.3397 -1.2273 -0.3351 10 6 4.0058 -0.3072 -1.1051 11 6 5.2899 -0.7114 -1.1819 12 7 5.4229 -1.8432 -0.4785 13 6 4.2587 -2.1758 0.0359 14 6 3.9892 -3.3616 0.8730 15 6 3.2623 -3.2325 2.0588 16 6 3.0129 -4.3430 2.8364 17 6 3.4814 -5.5880 2.4443 18 9 3.2329 -6.6722 3.2111 19 6 4.2030 -5.7247 1.2698 20 6 4.4596 -4.6195 0.4816 21 9 5.1639 -4.7529 -0.6636 22 1 -0.4850 0.8400 -0.0004 23 1 3.5817 0.5742 -1.5630 24 1 6.0796 -0.2048 -1.7167 25 1 2.8954 -2.2641 2.3655 26 1 2.4513 -4.2433 3.7534 27 1 4.5692 -6.6962 0.9719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082739212.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:38 Heat of formation + Delta-G solvation = -21.741386 kcal Electronic energy + Delta-G solvation = -17549.838619 eV Core-core repulsion = 14330.006217 eV Total energy + Delta-G solvation = -3219.832402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.00682 -49.92757 -42.63081 -39.54778 -35.97689 -33.56133 -32.75328 -31.80901 -29.06958 -27.17659 -24.42541 -24.04690 -22.63089 -21.19340 -19.86102 -19.12652 -18.19204 -17.99516 -16.97561 -16.92249 -16.46596 -16.30059 -16.00625 -15.64206 -15.39921 -15.33357 -14.88191 -14.36747 -14.23043 -13.71629 -13.14387 -13.09303 -12.91234 -12.86056 -12.45613 -11.98343 -11.53557 -10.83045 -10.59516 -10.18930 -9.94714 -8.93721 -8.90140 -6.64936 -0.26187 0.01530 1.05924 1.22421 1.31791 1.45346 1.97462 2.17599 2.37260 2.53063 2.82075 2.85969 3.37844 3.51143 3.65025 3.87860 4.14677 4.29313 4.49778 4.71108 4.76334 4.81022 4.95076 4.99725 5.12267 5.24299 5.57393 5.70794 5.90570 6.09566 6.56597 7.07476 7.38445 8.16416 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.008168 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.448068 B = 3427.058921 C = 4205.905316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.047 3.953 3 Si 0.951 3.049 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.265 5.265 10 C -0.141 4.141 11 C -0.046 4.046 12 N -0.508 5.508 13 C 0.129 3.871 14 C -0.045 4.045 15 C -0.045 4.045 16 C -0.148 4.148 17 C 0.130 3.870 18 F -0.127 7.127 19 C -0.183 4.183 20 C 0.134 3.866 21 F -0.133 7.133 22 H 0.298 0.702 23 H 0.170 0.830 24 H 0.190 0.810 25 H 0.140 0.860 26 H 0.173 0.827 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -4.718 4.436 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.122 0.878 9 N 0.070 4.930 10 C -0.281 4.281 11 C -0.202 4.202 12 N -0.228 5.228 13 C -0.123 4.123 14 C -0.048 4.048 15 C -0.065 4.065 16 C -0.166 4.166 17 C 0.110 3.890 18 F -0.105 7.105 19 C -0.202 4.202 20 C 0.113 3.887 21 F -0.111 7.111 22 H 0.109 0.891 23 H 0.187 0.813 24 H 0.207 0.793 25 H 0.157 0.843 26 H 0.191 0.809 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.202 -5.150 4.598 8.082 hybrid contribution -0.673 1.143 -0.504 1.419 sum 3.529 -4.007 4.094 6.728 Atomic orbital electron populations 1.69679 1.07530 1.31309 1.39636 1.25974 0.95997 1.02091 0.92521 0.85736 0.78827 0.77771 0.80234 1.17431 1.19737 1.18749 1.19420 0.81775 0.97849 1.50123 0.87771 1.41920 1.07558 1.15727 1.27829 1.22828 0.95749 1.01667 1.07859 1.22342 0.95854 0.96232 1.05818 1.70244 1.22455 1.15449 1.14702 1.21043 0.85226 0.97212 1.08867 1.17834 1.02499 0.88815 0.95665 1.21082 0.94294 1.00084 0.91002 1.21283 1.02827 0.89784 1.02737 1.17287 0.98414 0.83534 0.89783 1.91527 1.92312 1.52798 1.73887 1.21004 1.04211 0.99698 0.95270 1.17470 0.94806 0.92647 0.83812 1.91498 1.75940 1.96382 1.47306 0.89132 0.81329 0.79330 0.84258 0.80914 0.80807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.15 13.95 21.66 0.30 -42.85 15 2 C 0.05 2.30 5.47 84.95 0.46 2.76 15 3 Si 0.95 39.10 24.77 68.60 1.70 40.80 15 4 H -0.25 -9.50 6.47 99.48 0.64 -8.86 15 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 6 H -0.26 -11.36 6.90 99.48 0.69 -10.67 15 7 C -0.36 -18.68 9.28 84.01 0.78 -17.90 15 8 H 0.10 5.67 7.59 -2.91 -0.02 5.65 15 9 N -0.27 -13.21 2.75 -342.04 -0.94 -14.15 15 10 C -0.14 -6.51 8.67 83.07 0.72 -5.79 15 11 C -0.05 -2.03 11.83 83.59 0.99 -1.05 15 12 N -0.51 -24.46 11.06 -188.93 -2.09 -26.55 15 13 C 0.13 6.23 7.01 136.19 0.95 7.19 15 14 C -0.05 -1.87 5.61 -20.05 -0.11 -1.98 15 15 C -0.04 -1.59 8.74 22.53 0.20 -1.40 15 16 C -0.15 -4.10 10.01 22.28 0.22 -3.87 15 17 C 0.13 3.51 7.30 22.44 0.16 3.68 15 18 F -0.13 -3.13 17.26 44.97 0.78 -2.36 15 19 C -0.18 -5.25 9.99 22.32 0.22 -5.03 15 20 C 0.13 4.95 7.28 22.65 0.16 5.12 15 21 F -0.13 -5.34 16.64 44.97 0.75 -4.59 15 22 H 0.30 13.66 8.31 -92.71 -0.77 12.89 15 23 H 0.17 7.16 4.59 -2.91 -0.01 7.15 15 24 H 0.19 6.62 8.06 -2.91 -0.02 6.60 15 25 H 0.14 5.15 7.59 -2.91 -0.02 5.13 15 26 H 0.17 3.64 8.06 -2.91 -0.02 3.62 15 27 H 0.17 3.93 8.06 -2.91 -0.02 3.90 15 Total: -1.00 -58.82 250.35 6.40 -52.41 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.14 Total: 15.57 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.77 Total: -18.28 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.73 Total: -83.55 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.52 Total: -6.95 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.70 Total: 40.80 kcal Total: -58.82 6.40 -52.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739212.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.672 kcal (2) G-P(sol) polarization free energy of solvation -58.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds