Wall clock time and date at job start Mon Mar 30 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 120.00458 * 2 1 4 4 H 1.48496 * 109.47554 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46922 * 300.00178 * 3 2 1 6 6 H 1.48502 * 109.47264 * 59.99625 * 3 2 1 7 7 C 1.38855 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 169.15459 * 7 2 1 9 9 N 1.37195 * 120.00059 * 349.14670 * 7 2 1 10 10 C 1.37005 * 125.08908 * 338.97547 * 9 7 2 11 11 C 1.34304 * 109.92930 * 179.97438 * 10 9 7 12 12 C 1.50696 * 126.47491 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47662 * 260.03115 * 12 11 10 14 14 C 1.46674 * 107.05661 * 0.26414 * 11 10 9 15 15 C 1.39512 * 133.95945 * 179.73737 * 14 11 10 16 16 C 1.37892 * 119.64608 * 179.97438 * 15 14 11 17 17 Cl 1.73598 * 119.83336 * 179.97438 * 16 15 14 18 18 C 1.38849 * 120.33714 * 359.97438 * 16 15 14 19 19 C 1.37892 * 120.63289 * 359.64390 * 18 16 15 20 20 C 1.38135 * 125.09436 * 158.96592 * 9 7 2 21 21 H 0.97005 * 119.99628 * 0.02562 * 1 2 3 22 22 H 1.07991 * 125.03919 * 359.97387 * 10 9 7 23 23 H 1.09003 * 109.47011 * 20.03289 * 12 11 10 24 24 H 1.09002 * 109.47361 * 140.02937 * 12 11 10 25 25 H 1.00896 * 110.99824 * 56.04402 * 13 12 11 26 26 H 1.00899 * 111.00330 * 180.02562 * 13 12 11 27 27 H 1.08006 * 120.17335 * 359.97438 * 15 14 11 28 28 H 1.07991 * 119.68493 * 180.02562 * 18 16 15 29 29 H 1.07994 * 120.03200 * 179.86193 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 -0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8898 2.3965 1.2125 7 6 2.0086 -1.2025 -0.0005 8 1 3.0741 -1.2108 -0.1765 9 7 1.3410 -2.3801 0.2227 10 6 0.1253 -2.4906 0.8446 11 6 -0.2450 -3.7804 0.9002 12 6 -1.5143 -4.3228 1.5047 13 7 -1.2317 -4.8499 2.8464 14 6 0.8228 -4.5622 0.2678 15 6 1.0161 -5.9234 0.0308 16 6 2.1623 -6.3486 -0.6071 17 17 2.4080 -8.0413 -0.9040 18 6 3.1209 -5.4299 -1.0131 19 6 2.9393 -4.0809 -0.7923 20 6 1.7938 -3.6320 -0.1461 21 1 -0.4850 0.8401 -0.0004 22 1 -0.4501 -1.6632 1.2325 23 1 -2.2528 -3.5242 1.5763 24 1 -1.9040 -5.1225 0.8749 25 1 -0.8093 -4.1440 3.4307 26 1 -2.0677 -5.2201 3.2731 27 1 0.2719 -6.6402 0.3452 28 1 4.0144 -5.7745 -1.5122 29 1 3.6922 -3.3750 -1.1101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084832030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:43 Heat of formation + Delta-G solvation = 27.374004 kcal Electronic energy + Delta-G solvation = -15589.156743 eV Core-core repulsion = 12923.250824 eV Total energy + Delta-G solvation = -2665.905919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.91487 -38.26611 -36.79336 -36.04514 -34.56862 -32.39697 -30.37080 -29.53065 -27.26533 -24.89777 -23.47303 -22.34429 -20.55431 -19.50649 -17.58316 -17.28161 -16.63081 -16.32360 -16.09658 -15.46160 -15.12760 -14.89080 -14.69581 -13.98758 -13.81564 -13.62335 -13.31779 -13.03711 -12.93102 -12.64984 -12.25898 -12.12906 -11.99646 -11.66746 -11.42243 -10.99190 -10.32771 -9.45703 -8.84252 -8.75810 -8.40430 -6.26085 0.36045 0.75622 1.35932 1.38059 1.41284 1.52366 2.06140 2.15220 2.82417 2.98322 3.17831 4.00873 4.04554 4.15493 4.39870 4.45160 4.65708 4.76711 4.83476 5.00231 5.08390 5.16857 5.29749 5.31152 5.55178 5.67327 5.75928 6.09258 6.28052 6.39702 6.52649 6.80219 7.07597 7.49579 8.39583 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.007250 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.400953 B = 3861.299922 C = 4916.025396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.004 3.996 3 Si 1.010 2.990 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.305 5.305 10 C 0.068 3.932 11 C -0.239 4.239 12 C 0.159 3.841 13 N -0.848 5.848 14 C -0.111 4.111 15 C -0.061 4.061 16 C -0.080 4.080 17 Cl -0.080 7.080 18 C -0.116 4.116 19 C -0.112 4.112 20 C 0.021 3.979 21 H 0.284 0.716 22 H 0.158 0.842 23 H 0.029 0.971 24 H 0.072 0.928 25 H 0.339 0.661 26 H 0.347 0.653 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -5.217 1.407 5.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.202 4.202 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.498 4.498 8 H 0.125 0.875 9 N 0.032 4.968 10 C -0.067 4.067 11 C -0.246 4.246 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.118 4.118 15 C -0.081 4.081 16 C -0.108 4.108 17 Cl -0.051 7.051 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.090 4.090 21 H 0.095 0.905 22 H 0.176 0.824 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.165 -5.386 0.946 5.591 hybrid contribution -0.471 1.587 0.175 1.665 sum 0.694 -3.799 1.121 4.021 Atomic orbital electron populations 1.69980 1.07623 1.29908 1.43777 1.26444 0.96515 1.03485 0.93714 0.84627 0.78558 0.75213 0.78501 1.18082 1.19656 1.19232 1.20230 0.94430 0.82938 1.52236 0.87460 1.40360 1.14861 1.03898 1.37666 1.21953 0.88787 0.96981 0.98991 1.20105 0.99675 0.91154 1.13633 1.19680 0.90909 0.96691 0.89901 1.58693 1.33431 1.41614 1.04105 1.18912 0.95722 0.92247 1.04893 1.20231 0.96328 0.93522 0.97981 1.20369 0.98096 0.84361 1.08018 1.98283 1.96859 1.14747 1.95214 1.20594 0.99582 0.90531 1.02898 1.20009 0.95950 0.95548 1.01723 1.18961 0.98727 0.85982 1.05352 0.90547 0.82446 0.95284 0.90990 0.84865 0.83887 0.85271 0.83435 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.69 10.85 21.65 0.23 -44.45 15 2 C 0.00 0.18 5.35 84.90 0.45 0.63 15 3 Si 1.01 37.72 29.57 68.60 2.03 39.75 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 15 6 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.37 -19.19 9.93 84.00 0.83 -18.35 15 8 H 0.11 5.30 7.85 -2.91 -0.02 5.27 15 9 N -0.30 -15.89 2.92 -342.89 -1.00 -16.89 15 10 C 0.07 3.38 9.81 82.99 0.81 4.20 15 11 C -0.24 -10.64 5.83 -18.56 -0.11 -10.75 15 12 C 0.16 5.59 7.31 85.56 0.63 6.22 15 13 N -0.85 -25.79 9.61 -190.01 -1.83 -27.62 15 14 C -0.11 -5.09 6.35 -20.17 -0.13 -5.22 15 15 C -0.06 -2.45 9.87 22.50 0.22 -2.23 15 16 C -0.08 -2.95 6.32 22.33 0.14 -2.81 15 17 Cl -0.08 -2.42 28.94 -2.72 -0.08 -2.50 15 18 C -0.12 -4.22 9.80 22.33 0.22 -4.00 15 19 C -0.11 -4.71 9.95 22.36 0.22 -4.49 15 20 C 0.02 1.03 6.75 38.92 0.26 1.29 15 21 H 0.28 13.25 8.31 -92.70 -0.77 12.48 15 22 H 0.16 8.04 6.34 -2.92 -0.02 8.02 15 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.34 10.39 8.98 -89.70 -0.81 9.59 15 26 H 0.35 8.18 9.08 -89.69 -0.81 7.36 15 27 H 0.13 4.73 8.06 -2.91 -0.02 4.71 15 28 H 0.15 4.40 8.06 -2.92 -0.02 4.37 15 29 H 0.12 4.82 8.06 -2.91 -0.02 4.79 15 Total: -1.00 -56.45 271.49 2.50 -53.95 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.42 Total: 33.27 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 3.56 Total: -35.51 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.59 Total: -88.96 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -56.45 2.50 -53.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084832030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -56.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds