Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48501 * 109.46971 * 240.00153 * 3 2 1 5 5 H 1.48498 * 109.46678 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47186 * 119.99706 * 3 2 1 7 7 C 1.39713 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.41541 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.41971 * 126.55823 * 359.95523 * 9 7 2 11 11 N 1.30320 * 108.08112 * 179.75328 * 10 9 7 12 12 N 1.39879 * 109.24931 * 0.44540 * 11 10 9 13 13 C 1.40048 * 125.68725 * 179.80461 * 12 11 10 14 14 C 1.38857 * 120.04804 * 359.69790 * 13 12 11 15 15 C 1.38348 * 119.95483 * 180.25424 * 14 13 12 16 16 F 1.35102 * 119.97250 * 179.72111 * 15 14 13 17 17 C 1.38470 * 120.04268 * 359.42312 * 15 14 13 18 18 C 1.38479 * 120.09292 * 0.59884 * 17 15 14 19 19 F 1.35099 * 119.97845 * 179.70154 * 18 17 15 20 20 C 1.38338 * 120.04348 * 359.67921 * 18 17 15 21 21 C 1.34748 * 108.62525 * 359.54803 * 12 11 10 22 22 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 23 23 H 1.08008 * 125.95898 * 0.05953 * 10 9 7 24 24 H 1.08002 * 120.01738 * 359.97402 * 14 13 12 25 25 H 1.07999 * 119.95293 * 180.32301 * 17 15 14 26 26 H 1.08001 * 120.02598 * 180.02562 * 20 18 17 27 27 H 1.08000 * 126.42032 * 180.22970 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3009 -2.4357 0.0005 10 6 -0.1095 -2.5978 0.0009 11 7 -0.3699 -3.8747 -0.0046 12 7 0.8319 -4.5905 0.0016 13 6 0.9519 -5.9858 0.0023 14 6 -0.1861 -6.7815 0.0028 15 6 -0.0654 -8.1597 0.0088 16 9 -1.1724 -8.9341 0.0151 17 6 1.1891 -8.7457 0.0021 18 6 2.3253 -7.9541 0.0020 19 9 3.5482 -8.5283 0.0016 20 6 2.2090 -6.5756 0.0018 21 6 1.8551 -3.7136 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8394 -1.8017 0.0004 24 1 -1.1648 -6.3246 0.0032 25 1 1.2816 -9.8217 0.0015 26 1 3.0953 -5.9584 0.0013 27 1 2.9075 -3.9562 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084930459.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = 6.323734 kcal Electronic energy + Delta-G solvation = -16840.579880 eV Core-core repulsion = 13621.964473 eV Total energy + Delta-G solvation = -3218.615407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.87492 -48.83621 -40.14835 -38.08454 -34.03887 -32.27593 -30.31946 -29.30066 -28.54791 -25.34857 -22.91414 -22.61799 -20.00323 -19.74949 -18.24008 -17.04457 -16.60280 -16.16912 -15.84190 -15.39170 -15.24960 -15.15595 -14.94751 -14.16134 -14.01776 -13.38960 -13.07937 -12.36337 -11.84861 -11.71059 -11.71021 -11.49029 -11.32148 -11.26167 -10.78090 -10.36368 -9.80545 -9.30509 -9.25028 -8.61283 -8.04135 -7.38685 -6.84664 -4.35771 1.07465 1.19186 2.80334 3.02281 3.04674 3.06333 3.28092 3.86045 3.88906 4.01573 4.14468 4.52593 5.02268 5.09270 5.22496 5.27889 5.48658 5.91673 6.03541 6.16244 6.22966 6.31263 6.61890 6.92425 6.95667 7.12230 7.22466 7.70229 8.18857 8.23917 8.60671 8.74912 8.98242 10.13705 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.005003 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.074638 B = 5595.188239 C = 6290.412396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.069 3.931 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.426 4.426 8 H 0.078 0.922 9 C 0.006 3.994 10 C 0.076 3.924 11 N -0.328 5.328 12 N -0.333 5.333 13 C 0.271 3.729 14 C -0.204 4.204 15 C 0.160 3.840 16 F -0.134 7.134 17 C -0.248 4.248 18 C 0.164 3.836 19 F -0.134 7.134 20 C -0.220 4.220 21 C -0.169 4.169 22 H 0.283 0.717 23 H 0.215 0.785 24 H 0.149 0.851 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -8.069 0.014 8.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.145 4.145 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.458 4.458 8 H 0.097 0.903 9 C -0.002 4.002 10 C -0.115 4.115 11 N -0.144 5.144 12 N -0.108 5.108 13 C 0.169 3.831 14 C -0.226 4.226 15 C 0.140 3.860 16 F -0.112 7.112 17 C -0.270 4.270 18 C 0.144 3.856 19 F -0.112 7.112 20 C -0.243 4.243 21 C -0.302 4.302 22 H 0.094 0.906 23 H 0.231 0.769 24 H 0.167 0.833 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.670 -8.681 0.009 8.706 hybrid contribution 1.134 1.129 0.001 1.600 sum 1.804 -7.552 0.010 7.764 Atomic orbital electron populations 1.69357 1.07457 1.29321 1.39568 1.25841 0.94933 1.01480 0.92266 0.86075 0.79622 0.79493 0.79795 1.19050 1.20304 1.19042 1.18888 0.94359 0.88727 1.43849 0.90343 1.18374 0.91526 0.92029 0.98297 1.25667 0.98536 0.91990 0.95332 1.76777 1.04802 1.06946 1.25858 1.44771 1.05575 1.01484 1.59019 1.16731 0.92206 0.81139 0.93055 1.20671 1.00168 0.91096 1.10703 1.16849 0.81908 0.87750 0.99487 1.91498 1.51319 1.74764 1.93666 1.20643 0.90282 1.01067 1.14968 1.16730 0.79494 0.89969 0.99403 1.91499 1.41125 1.84912 1.93679 1.20588 0.97781 0.93193 1.12783 1.22083 0.92355 0.88810 1.26996 0.90563 0.76936 0.83293 0.84060 0.83818 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.75 10.32 55.54 0.57 -19.17 15 2 C 0.07 1.61 5.49 -17.35 -0.10 1.52 15 3 Si 0.93 17.82 29.56 -169.99 -5.02 12.80 15 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 15 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.43 -10.63 9.40 -37.77 -0.36 -10.99 15 8 H 0.08 1.86 7.84 -52.49 -0.41 1.45 15 9 C 0.01 0.15 5.93 -106.82 -0.63 -0.48 15 10 C 0.08 1.89 10.91 -16.76 -0.18 1.71 15 11 N -0.33 -7.89 11.73 30.99 0.36 -7.53 15 12 N -0.33 -7.53 3.77 -9.88 -0.04 -7.57 15 13 C 0.27 5.23 6.68 -83.64 -0.56 4.67 15 14 C -0.20 -3.61 9.63 -39.31 -0.38 -3.99 15 15 C 0.16 2.48 7.30 -39.46 -0.29 2.20 15 16 F -0.13 -2.00 17.27 2.25 0.04 -1.96 15 17 C -0.25 -3.52 10.00 -39.41 -0.39 -3.92 15 18 C 0.16 2.48 7.29 -39.46 -0.29 2.19 15 19 F -0.13 -1.93 17.27 2.25 0.04 -1.89 15 20 C -0.22 -3.71 9.42 -39.31 -0.37 -4.08 15 21 C -0.17 -3.93 10.85 -15.88 -0.17 -4.10 15 22 H 0.28 6.18 8.30 -40.82 -0.34 5.84 15 23 H 0.21 5.26 5.77 -52.48 -0.30 4.96 15 24 H 0.15 2.71 7.67 -52.49 -0.40 2.30 15 25 H 0.14 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.14 2.31 6.71 -52.49 -0.35 1.96 15 27 H 0.15 3.10 7.01 -52.49 -0.37 2.73 15 LS Contribution 255.49 15.07 3.85 3.85 Total: -1.00 -25.16 255.49 -5.31 -30.47 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -1.39 Total: 6.26 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.72 Total: -15.26 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.90 Total: -34.27 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.02 Total: 12.80 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.16 -5.31 -30.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930459.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.795 kcal (2) G-P(sol) polarization free energy of solvation -25.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds