Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48501 * 109.46971 * 240.00153 * 3 2 1 5 5 H 1.48498 * 109.46678 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47186 * 119.99706 * 3 2 1 7 7 C 1.39713 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.41541 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.41971 * 126.55823 * 359.95523 * 9 7 2 11 11 N 1.30320 * 108.08112 * 179.75328 * 10 9 7 12 12 N 1.39879 * 109.24931 * 0.44540 * 11 10 9 13 13 C 1.40048 * 125.68725 * 179.80461 * 12 11 10 14 14 C 1.38857 * 120.04804 * 359.69790 * 13 12 11 15 15 C 1.38348 * 119.95483 * 180.25424 * 14 13 12 16 16 F 1.35102 * 119.97250 * 179.72111 * 15 14 13 17 17 C 1.38470 * 120.04268 * 359.42312 * 15 14 13 18 18 C 1.38479 * 120.09292 * 0.59884 * 17 15 14 19 19 F 1.35099 * 119.97845 * 179.70154 * 18 17 15 20 20 C 1.38338 * 120.04348 * 359.67921 * 18 17 15 21 21 C 1.34748 * 108.62525 * 359.54803 * 12 11 10 22 22 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 23 23 H 1.08008 * 125.95898 * 0.05953 * 10 9 7 24 24 H 1.08002 * 120.01738 * 359.97402 * 14 13 12 25 25 H 1.07999 * 119.95293 * 180.32301 * 17 15 14 26 26 H 1.08001 * 120.02598 * 180.02562 * 20 18 17 27 27 H 1.08000 * 126.42032 * 180.22970 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3009 -2.4357 0.0005 10 6 -0.1095 -2.5978 0.0009 11 7 -0.3699 -3.8747 -0.0046 12 7 0.8319 -4.5905 0.0016 13 6 0.9519 -5.9858 0.0023 14 6 -0.1861 -6.7815 0.0028 15 6 -0.0654 -8.1597 0.0088 16 9 -1.1724 -8.9341 0.0151 17 6 1.1891 -8.7457 0.0021 18 6 2.3253 -7.9541 0.0020 19 9 3.5482 -8.5283 0.0016 20 6 2.2090 -6.5756 0.0018 21 6 1.8551 -3.7136 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8394 -1.8017 0.0004 24 1 -1.1648 -6.3246 0.0032 25 1 1.2816 -9.8217 0.0015 26 1 3.0953 -5.9584 0.0013 27 1 2.9075 -3.9562 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084930459.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = -5.572436 kcal Electronic energy + Delta-G solvation = -16841.095737 eV Core-core repulsion = 13621.964473 eV Total energy + Delta-G solvation = -3219.131264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.09966 -50.07755 -41.84419 -39.54481 -35.73692 -33.85006 -31.79627 -30.98304 -30.09113 -27.07299 -24.42132 -24.01362 -21.62451 -21.45454 -19.86229 -18.55534 -17.96217 -17.52831 -17.10298 -16.97035 -16.67275 -16.45025 -16.37773 -15.72104 -15.43480 -15.04492 -14.67591 -13.79249 -13.51067 -13.20405 -13.11297 -13.01580 -12.83374 -12.76222 -12.52442 -11.92827 -11.39764 -11.11511 -10.84849 -9.93003 -9.77022 -9.06109 -8.54797 -6.18845 -0.33311 -0.15016 1.21981 1.46152 1.51070 1.56890 1.69845 2.22171 2.27584 2.42305 2.81838 3.16400 3.40198 3.72845 3.81636 3.86430 4.09737 4.37211 4.50898 4.70267 4.87637 4.89917 5.00937 5.18980 5.34345 5.47834 5.62130 5.87915 6.39518 6.51505 6.83785 6.96693 7.18557 8.45530 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.005003 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.074638 B = 5595.188239 C = 6290.412396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.080 0.920 9 C -0.032 4.032 10 C 0.046 3.954 11 N -0.338 5.338 12 N -0.338 5.338 13 C 0.236 3.764 14 C -0.205 4.205 15 C 0.165 3.835 16 F -0.127 7.127 17 C -0.214 4.214 18 C 0.170 3.830 19 F -0.123 7.123 20 C -0.210 4.210 21 C -0.152 4.152 22 H 0.288 0.712 23 H 0.206 0.794 24 H 0.138 0.862 25 H 0.179 0.821 26 H 0.151 0.849 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -10.158 0.015 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.098 0.902 9 C -0.041 4.041 10 C -0.143 4.143 11 N -0.156 5.156 12 N -0.116 5.116 13 C 0.138 3.862 14 C -0.228 4.228 15 C 0.144 3.856 16 F -0.105 7.105 17 C -0.234 4.234 18 C 0.150 3.850 19 F -0.102 7.102 20 C -0.233 4.233 21 C -0.287 4.287 22 H 0.099 0.901 23 H 0.222 0.778 24 H 0.156 0.844 25 H 0.196 0.804 26 H 0.169 0.831 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.951 -10.847 0.011 11.021 hybrid contribution 0.760 1.309 0.000 1.513 sum 2.711 -9.539 0.011 9.916 Atomic orbital electron populations 1.69428 1.08599 1.30245 1.40221 1.26659 0.95720 1.04353 0.91549 0.85039 0.78287 0.75363 0.79698 1.18736 1.19563 1.18722 1.19119 0.94593 0.89617 1.46355 0.90183 1.18729 0.92001 0.93175 1.00171 1.25495 0.98617 0.92223 0.97978 1.76644 1.05831 1.06768 1.26335 1.44931 1.04798 1.02716 1.59187 1.17035 0.93721 0.79850 0.95616 1.20700 0.99402 0.92257 1.10394 1.16760 0.82725 0.86815 0.99268 1.91528 1.51159 1.74292 1.93540 1.21006 0.88947 1.02847 1.10620 1.16633 0.80178 0.89219 0.98964 1.91541 1.40587 1.84549 1.93496 1.20728 0.97045 0.94309 1.11238 1.22503 0.93487 0.88597 1.24147 0.90093 0.77764 0.84428 0.80385 0.83095 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.43 10.32 21.79 0.22 -42.20 15 2 C 0.03 1.34 5.49 85.17 0.47 1.81 15 3 Si 0.99 37.00 29.56 68.60 2.03 39.03 15 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 5 H -0.27 -9.63 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 7 C -0.46 -23.96 9.40 23.44 0.22 -23.74 15 8 H 0.08 3.90 7.84 -2.91 -0.02 3.88 15 9 C -0.03 -1.69 5.93 -21.29 -0.13 -1.82 15 10 C 0.05 2.42 10.91 85.84 0.94 3.35 15 11 N -0.34 -16.81 11.73 -55.87 -0.66 -17.47 15 12 N -0.34 -15.41 3.77 -185.18 -0.70 -16.11 15 13 C 0.24 8.84 6.68 38.12 0.25 9.10 15 14 C -0.21 -6.99 9.63 22.44 0.22 -6.77 15 15 C 0.16 4.56 7.30 22.35 0.16 4.72 15 16 F -0.13 -3.37 17.27 44.97 0.78 -2.59 15 17 C -0.21 -5.03 10.00 22.38 0.22 -4.80 15 18 C 0.17 4.44 7.29 22.35 0.16 4.60 15 19 F -0.12 -3.01 17.27 44.97 0.78 -2.23 15 20 C -0.21 -6.55 9.42 22.44 0.21 -6.34 15 21 C -0.15 -7.13 10.85 84.50 0.92 -6.21 15 22 H 0.29 13.00 8.30 -92.71 -0.77 12.23 15 23 H 0.21 10.82 5.77 -2.91 -0.02 10.81 15 24 H 0.14 5.00 7.67 -2.91 -0.02 4.98 15 25 H 0.18 3.02 8.06 -2.91 -0.02 2.99 15 26 H 0.15 4.46 6.71 -2.91 -0.02 4.45 15 27 H 0.17 7.03 7.01 -2.91 -0.02 7.01 15 Total: -1.00 -55.24 255.49 7.33 -47.91 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.23 Total: 19.76 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.65 Total: -26.10 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.13 Total: -75.78 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 1.55 Total: -4.82 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -55.24 7.33 -47.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930459.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.341 kcal (2) G-P(sol) polarization free energy of solvation -55.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds