Wall clock time and date at job start Mon Mar 30 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86804 * 120.00156 * 2 1 4 4 H 1.48500 * 109.47022 * 240.00004 * 3 2 1 5 5 H 1.48501 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46822 * 120.00050 * 3 2 1 7 7 C 1.39711 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.41527 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.41966 * 126.56244 * 0.13777 * 9 7 2 11 11 N 1.30335 * 108.07586 * 180.26546 * 10 9 7 12 12 N 1.39872 * 109.24886 * 359.76247 * 11 10 9 13 13 C 1.40111 * 125.68115 * 180.02562 * 12 11 10 14 14 C 1.38882 * 120.03639 * 359.97438 * 13 12 11 15 15 C 1.38107 * 120.00175 * 180.02562 * 14 13 12 16 16 C 1.38457 * 120.06838 * 0.02562 * 15 14 13 17 17 F 1.35093 * 119.96597 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.06431 * 359.97438 * 16 15 14 19 19 F 1.35099 * 119.99442 * 180.02562 * 18 16 15 20 20 C 1.38294 * 120.00634 * 359.72186 * 18 16 15 21 21 C 1.34722 * 108.63175 * 359.97438 * 12 11 10 22 22 H 0.96999 * 119.99605 * 359.97438 * 1 2 3 23 23 H 1.08003 * 125.95729 * 0.06102 * 10 9 7 24 24 H 1.08005 * 120.00253 * 359.97438 * 14 13 12 25 25 H 1.07993 * 119.96769 * 179.97438 * 15 14 13 26 26 H 1.07998 * 120.03885 * 180.29610 * 20 18 16 27 27 H 1.08002 * 126.41640 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2793 2.7465 -0.0006 6 1 3.0980 1.6963 1.2126 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0010 9 6 1.3010 -2.4356 0.0005 10 6 -0.1093 -2.5978 -0.0027 11 7 -0.3696 -3.8749 0.0042 12 7 0.8323 -4.5903 0.0067 13 6 0.9524 -5.9863 0.0133 14 6 -0.1859 -6.7819 0.0186 15 6 -0.0668 -8.1578 0.0257 16 6 1.1869 -8.7455 0.0280 17 9 1.3010 -10.0916 0.0354 18 6 2.3255 -7.9537 0.0227 19 9 3.5480 -8.5286 0.0244 20 6 2.2095 -6.5757 0.0093 21 6 1.8552 -3.7136 0.0004 22 1 -0.4849 0.8401 0.0004 23 1 -0.8392 -1.8017 -0.0066 24 1 -1.1644 -6.3247 0.0180 25 1 -0.9523 -8.7760 0.0302 26 1 3.0958 -5.9586 0.0003 27 1 2.9076 -3.9562 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084930465.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:58 Heat of formation + Delta-G solvation = 7.459194 kcal Electronic energy + Delta-G solvation = -16855.541426 eV Core-core repulsion = 13636.975257 eV Total energy + Delta-G solvation = -3218.566170 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.22667 -48.29374 -40.15249 -38.16018 -34.01056 -32.17498 -30.66692 -29.37241 -28.15672 -25.29925 -22.99175 -22.66427 -19.93308 -19.75830 -18.17998 -17.44507 -16.69538 -16.24520 -16.08095 -15.54638 -15.04882 -14.73709 -14.26887 -14.05441 -13.88463 -13.36542 -13.23692 -12.54957 -12.33066 -11.79528 -11.63722 -11.32566 -11.32385 -11.16257 -10.72885 -10.35326 -9.75212 -9.29854 -9.19476 -8.83037 -7.98436 -7.29389 -6.83585 -4.34307 1.03302 1.18972 2.79903 3.02604 3.05154 3.06255 3.33894 3.86741 3.89601 4.02456 4.09702 4.56633 4.76841 5.18432 5.23468 5.26679 5.50465 5.89571 5.98704 6.18534 6.26921 6.29680 6.62273 6.90745 6.96586 7.12979 7.23775 7.71515 8.20229 8.25351 8.61880 8.76177 8.99567 10.14842 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.050991 B = 0.004714 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.982779 B = 5938.138087 C = 6477.256064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.068 3.932 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.426 4.426 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.074 3.926 11 N -0.329 5.329 12 N -0.333 5.333 13 C 0.237 3.763 14 C -0.139 4.139 15 C -0.090 4.090 16 C 0.004 3.996 17 F -0.139 7.139 18 C 0.107 3.893 19 F -0.132 7.132 20 C -0.187 4.187 21 C -0.168 4.168 22 H 0.283 0.717 23 H 0.214 0.786 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -7.687 0.019 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.145 4.145 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.096 0.904 9 C -0.003 4.003 10 C -0.117 4.117 11 N -0.145 5.145 12 N -0.109 5.109 13 C 0.135 3.865 14 C -0.161 4.161 15 C -0.109 4.109 16 C -0.017 4.017 17 F -0.118 7.118 18 C 0.086 3.914 19 F -0.110 7.110 20 C -0.210 4.210 21 C -0.302 4.302 22 H 0.094 0.906 23 H 0.230 0.770 24 H 0.165 0.835 25 H 0.162 0.838 26 H 0.165 0.835 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.507 -8.328 0.024 8.344 hybrid contribution 1.413 1.059 0.002 1.766 sum 0.906 -7.269 0.026 7.325 Atomic orbital electron populations 1.69363 1.07435 1.29257 1.39756 1.25832 0.94930 1.01439 0.92310 0.86085 0.79624 0.79542 0.79781 1.19070 1.20316 1.19066 1.18877 0.94329 0.88760 1.43921 0.90408 1.18360 0.91555 0.91997 0.98428 1.25633 0.98500 0.91975 0.95623 1.76743 1.04779 1.06940 1.26031 1.44786 1.05500 1.01551 1.59075 1.17197 0.92854 0.81343 0.95115 1.20708 0.98938 0.91777 1.04643 1.20782 0.95453 0.94881 0.99822 1.17400 0.93408 0.77101 1.13839 1.91457 1.96835 1.28687 1.94851 1.17179 0.79154 0.90564 1.04522 1.91496 1.40798 1.84731 1.93981 1.20463 0.98104 0.92222 1.10216 1.22088 0.92376 0.88937 1.26786 0.90612 0.76990 0.83468 0.83807 0.83517 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.74 10.32 55.54 0.57 -19.16 15 2 C 0.07 1.61 5.49 -17.35 -0.10 1.52 15 3 Si 0.92 17.85 29.56 -169.99 -5.02 12.82 15 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.43 -10.65 9.40 -37.78 -0.36 -11.01 15 8 H 0.08 1.85 7.84 -52.49 -0.41 1.44 15 9 C 0.00 0.12 5.93 -106.82 -0.63 -0.51 15 10 C 0.07 1.81 10.92 -16.76 -0.18 1.63 15 11 N -0.33 -7.74 11.73 30.99 0.36 -7.38 15 12 N -0.33 -7.41 3.77 -9.87 -0.04 -7.45 15 13 C 0.24 4.45 6.68 -83.61 -0.56 3.89 15 14 C -0.14 -2.27 9.65 -39.39 -0.38 -2.65 15 15 C -0.09 -1.25 10.02 -39.55 -0.40 -1.65 15 16 C 0.00 0.07 7.31 -39.33 -0.29 -0.22 15 17 F -0.14 -2.12 17.18 2.25 0.04 -2.08 15 18 C 0.11 1.72 7.30 -39.39 -0.29 1.43 15 19 F -0.13 -2.11 17.18 2.25 0.04 -2.07 15 20 C -0.19 -3.17 9.42 -39.34 -0.37 -3.54 15 21 C -0.17 -3.89 10.85 -15.89 -0.17 -4.06 15 22 H 0.28 6.16 8.30 -40.82 -0.34 5.82 15 23 H 0.21 5.21 5.77 -52.48 -0.30 4.90 15 24 H 0.15 2.37 7.67 -52.48 -0.40 1.97 15 25 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.15 2.37 6.71 -52.49 -0.35 2.02 15 27 H 0.15 3.08 7.01 -52.49 -0.37 2.71 15 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -25.59 255.37 -5.31 -30.90 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -1.39 Total: 5.74 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.72 Total: -15.17 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.90 Total: -33.99 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.02 Total: 12.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.59 -5.31 -30.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930465.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.362 kcal (2) G-P(sol) polarization free energy of solvation -25.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds