Wall clock time and date at job start Mon Mar 30 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86804 * 120.00156 * 2 1 4 4 H 1.48500 * 109.47022 * 240.00004 * 3 2 1 5 5 H 1.48501 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46822 * 120.00050 * 3 2 1 7 7 C 1.39711 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.41527 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.41966 * 126.56244 * 0.13777 * 9 7 2 11 11 N 1.30335 * 108.07586 * 180.26546 * 10 9 7 12 12 N 1.39872 * 109.24886 * 359.76247 * 11 10 9 13 13 C 1.40111 * 125.68115 * 180.02562 * 12 11 10 14 14 C 1.38882 * 120.03639 * 359.97438 * 13 12 11 15 15 C 1.38107 * 120.00175 * 180.02562 * 14 13 12 16 16 C 1.38457 * 120.06838 * 0.02562 * 15 14 13 17 17 F 1.35093 * 119.96597 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.06431 * 359.97438 * 16 15 14 19 19 F 1.35099 * 119.99442 * 180.02562 * 18 16 15 20 20 C 1.38294 * 120.00634 * 359.72186 * 18 16 15 21 21 C 1.34722 * 108.63175 * 359.97438 * 12 11 10 22 22 H 0.96999 * 119.99605 * 359.97438 * 1 2 3 23 23 H 1.08003 * 125.95729 * 0.06102 * 10 9 7 24 24 H 1.08005 * 120.00253 * 359.97438 * 14 13 12 25 25 H 1.07993 * 119.96769 * 179.97438 * 15 14 13 26 26 H 1.07998 * 120.03885 * 180.29610 * 20 18 16 27 27 H 1.08002 * 126.41640 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2793 2.7465 -0.0006 6 1 3.0980 1.6963 1.2126 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0010 9 6 1.3010 -2.4356 0.0005 10 6 -0.1093 -2.5978 -0.0027 11 7 -0.3696 -3.8749 0.0042 12 7 0.8323 -4.5903 0.0067 13 6 0.9524 -5.9863 0.0133 14 6 -0.1859 -6.7819 0.0186 15 6 -0.0668 -8.1578 0.0257 16 6 1.1869 -8.7455 0.0280 17 9 1.3010 -10.0916 0.0354 18 6 2.3255 -7.9537 0.0227 19 9 3.5480 -8.5286 0.0244 20 6 2.2095 -6.5757 0.0093 21 6 1.8552 -3.7136 0.0004 22 1 -0.4849 0.8401 0.0004 23 1 -0.8392 -1.8017 -0.0066 24 1 -1.1644 -6.3247 0.0180 25 1 -0.9523 -8.7760 0.0302 26 1 3.0958 -5.9586 0.0003 27 1 2.9076 -3.9562 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084930465.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:58 Heat of formation + Delta-G solvation = -4.773890 kcal Electronic energy + Delta-G solvation = -16856.071893 eV Core-core repulsion = 13636.975257 eV Total energy + Delta-G solvation = -3219.096636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.51895 -49.58049 -41.82127 -39.60437 -35.70909 -33.73980 -32.05523 -31.10177 -29.69337 -27.00691 -24.37230 -24.15106 -21.54264 -21.46725 -19.78522 -18.85054 -18.08941 -17.67785 -17.37739 -17.16688 -16.63898 -16.01418 -15.73799 -15.58126 -15.21175 -14.92763 -14.76703 -13.96959 -13.76563 -13.38825 -13.27421 -12.93408 -12.85274 -12.68008 -12.29895 -11.91642 -11.36874 -11.09749 -10.76305 -10.14929 -9.70854 -8.92311 -8.53706 -6.16960 -0.37004 -0.10994 1.21495 1.46267 1.51286 1.56867 1.75755 2.23771 2.28034 2.45713 2.77235 3.23768 3.41367 3.50972 3.85627 3.90849 4.05467 4.48604 4.62117 4.68168 4.83083 4.95561 5.02381 5.21290 5.37958 5.49641 5.61349 5.90869 6.40889 6.54979 6.85355 6.98221 7.21395 8.46565 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.050991 B = 0.004714 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.982779 B = 5938.138087 C = 6477.256064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.028 3.972 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.077 0.923 9 C -0.033 4.033 10 C 0.044 3.956 11 N -0.332 5.332 12 N -0.337 5.337 13 C 0.200 3.800 14 C -0.131 4.131 15 C -0.070 4.070 16 C 0.022 3.978 17 F -0.133 7.133 18 C 0.100 3.900 19 F -0.130 7.130 20 C -0.177 4.177 21 C -0.154 4.154 22 H 0.288 0.712 23 H 0.206 0.794 24 H 0.150 0.850 25 H 0.186 0.814 26 H 0.152 0.848 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -9.453 0.029 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.182 4.182 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.096 0.904 9 C -0.042 4.042 10 C -0.145 4.145 11 N -0.150 5.150 12 N -0.115 5.115 13 C 0.102 3.898 14 C -0.152 4.152 15 C -0.089 4.089 16 C 0.001 3.999 17 F -0.112 7.112 18 C 0.079 3.921 19 F -0.109 7.109 20 C -0.200 4.200 21 C -0.290 4.290 22 H 0.099 0.901 23 H 0.222 0.778 24 H 0.167 0.833 25 H 0.203 0.797 26 H 0.169 0.831 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.226 -10.172 0.035 10.174 hybrid contribution 1.349 1.147 -0.001 1.770 sum 1.123 -9.025 0.034 9.095 Atomic orbital electron populations 1.69429 1.08504 1.30188 1.40329 1.26627 0.95733 1.04239 0.91622 0.85064 0.78317 0.75520 0.79626 1.18832 1.19475 1.18830 1.19099 0.94497 0.89743 1.46480 0.90441 1.18709 0.92158 0.93064 1.00267 1.25453 0.98439 0.92313 0.98311 1.76603 1.05535 1.06600 1.26272 1.44950 1.04711 1.02775 1.59066 1.17591 0.94489 0.80081 0.97618 1.20864 0.98302 0.92627 1.03432 1.21100 0.96402 0.93993 0.97453 1.17575 0.93534 0.77232 1.11561 1.91491 1.96826 1.28327 1.94574 1.17198 0.79599 0.90286 1.04980 1.91507 1.40821 1.84562 1.93987 1.20510 0.97716 0.92776 1.08951 1.22473 0.93491 0.88836 1.24163 0.90112 0.77774 0.83267 0.79700 0.83068 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.11 10.32 21.79 0.22 -41.88 15 2 C 0.03 1.36 5.49 85.17 0.47 1.83 15 3 Si 0.99 37.03 29.56 68.60 2.03 39.06 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 7 C -0.47 -24.04 9.40 23.44 0.22 -23.82 15 8 H 0.08 3.81 7.84 -2.91 -0.02 3.79 15 9 C -0.03 -1.74 5.93 -21.29 -0.13 -1.87 15 10 C 0.04 2.26 10.92 85.84 0.94 3.19 15 11 N -0.33 -15.91 11.73 -55.87 -0.66 -16.56 15 12 N -0.34 -14.94 3.77 -185.12 -0.70 -15.64 15 13 C 0.20 7.22 6.68 38.12 0.25 7.47 15 14 C -0.13 -3.93 9.65 22.39 0.22 -3.72 15 15 C -0.07 -1.66 10.02 22.29 0.22 -1.44 15 16 C 0.02 0.59 7.31 22.43 0.16 0.76 15 17 F -0.13 -3.49 17.18 44.97 0.77 -2.72 15 18 C 0.10 2.93 7.30 22.39 0.16 3.09 15 19 F -0.13 -3.82 17.18 44.97 0.77 -3.05 15 20 C -0.18 -5.64 9.42 22.43 0.21 -5.43 15 21 C -0.15 -7.18 10.85 84.50 0.92 -6.26 15 22 H 0.29 12.89 8.30 -92.71 -0.77 12.12 15 23 H 0.21 10.62 5.77 -2.91 -0.02 10.60 15 24 H 0.15 4.49 7.67 -2.91 -0.02 4.47 15 25 H 0.19 2.92 8.06 -2.91 -0.02 2.89 15 26 H 0.15 4.65 6.71 -2.91 -0.02 4.63 15 27 H 0.17 6.92 7.01 -2.91 -0.02 6.90 15 Total: -1.00 -55.63 255.37 7.32 -48.32 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 1.23 Total: 18.68 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.65 Total: -26.20 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.13 Total: -74.09 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.55 Total: -5.77 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -55.63 7.32 -48.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930465.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.541 kcal (2) G-P(sol) polarization free energy of solvation -55.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds