Wall clock time and date at job start Mon Mar 30 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47127 * 274.07849 * 3 2 1 5 5 H 1.48494 * 109.47208 * 34.07902 * 3 2 1 6 6 H 1.48508 * 109.46751 * 154.08000 * 3 2 1 7 7 C 1.38849 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00306 * 340.78930 * 7 2 1 9 9 N 1.37214 * 119.99439 * 160.78261 * 7 2 1 10 10 C 1.37018 * 125.09347 * 338.48144 * 9 7 2 11 11 C 1.34295 * 109.92450 * 180.27198 * 10 9 7 12 12 C 1.50704 * 126.47030 * 179.79833 * 11 10 9 13 13 N 1.46894 * 109.47216 * 259.97108 * 12 11 10 14 14 C 1.46679 * 107.05800 * 359.77145 * 11 10 9 15 15 C 1.39515 * 133.95006 * 179.97438 * 14 11 10 16 16 C 1.37766 * 119.67097 * 180.02562 * 15 14 11 17 17 C 1.38848 * 120.35607 * 0.05020 * 16 15 14 18 18 Cl 1.73604 * 119.69320 * 179.97438 * 17 16 15 19 19 C 1.38012 * 120.61597 * 359.97438 * 17 16 15 20 20 C 1.38118 * 125.08718 * 158.35870 * 9 7 2 21 21 H 0.97001 * 120.00082 * 359.97438 * 1 2 3 22 22 H 1.07995 * 125.03801 * 0.03129 * 10 9 7 23 23 H 1.08998 * 109.47417 * 19.97496 * 12 11 10 24 24 H 1.09005 * 109.47095 * 139.97334 * 12 11 10 25 25 H 1.00902 * 110.99639 * 56.04439 * 13 12 11 26 26 H 1.00899 * 111.00344 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.16570 * 0.02562 * 15 14 11 28 28 H 1.08004 * 119.81910 * 180.02562 * 16 15 14 29 29 H 1.07996 * 120.04623 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4096 2.0963 -1.3965 5 1 1.4916 2.6262 0.7845 6 1 3.5865 1.4168 0.6120 7 6 2.0087 -1.2025 0.0005 8 1 1.5138 -2.1117 0.3087 9 7 3.3235 -1.2357 -0.3906 10 6 3.9358 -0.2943 -1.1755 11 6 5.2209 -0.6298 -1.3743 12 6 6.2327 0.1397 -2.1837 13 7 6.3731 -0.4794 -3.5084 14 6 5.4539 -1.8862 -0.6542 15 6 6.5640 -2.7143 -0.4860 16 6 6.4524 -3.8587 0.2730 17 6 5.2428 -4.1906 0.8684 18 17 5.1213 -5.6371 1.8207 19 6 4.1361 -3.3813 0.7104 20 6 4.2284 -2.2220 -0.0500 21 1 -0.4850 0.8400 0.0004 22 1 3.4552 0.5851 -1.5781 23 1 5.8983 1.1708 -2.2981 24 1 7.1950 0.1245 -1.6718 25 1 5.4815 -0.5358 -3.9774 26 1 7.0463 0.0189 -4.0710 27 1 7.5061 -2.4596 -0.9484 28 1 7.3103 -4.5013 0.4051 29 1 3.1997 -3.6484 1.1773 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132427917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:04 Heat of formation + Delta-G solvation = 49.972364 kcal Electronic energy + Delta-G solvation = -15685.038930 eV Core-core repulsion = 13020.112950 eV Total energy + Delta-G solvation = -2664.925980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55359 -36.87629 -35.44476 -34.70898 -33.05419 -30.94742 -29.31255 -28.06329 -25.59662 -23.61514 -21.95696 -20.78034 -19.35342 -17.77432 -16.03563 -16.00551 -15.63113 -14.92333 -14.34864 -14.18890 -13.71940 -13.46675 -13.09789 -13.08094 -12.55267 -12.29562 -12.19067 -11.54777 -11.33864 -10.99863 -10.69077 -10.61169 -10.31195 -10.19776 -10.07252 -9.31235 -8.77128 -8.34153 -7.46289 -7.01383 -6.98360 -4.44372 1.76533 2.24617 2.74053 2.80556 2.99238 3.06272 3.40764 3.74198 4.19581 4.43537 4.78809 5.14744 5.41257 5.52626 5.69577 5.74205 5.85747 6.07481 6.20665 6.29020 6.43094 6.51840 6.78918 6.97271 7.04598 7.22826 7.41539 7.45106 7.69577 7.71888 7.78801 8.06834 8.68456 8.96759 10.08882 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.009241 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.784996 B = 3029.214123 C = 4312.249879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.344 4.344 8 H 0.123 0.877 9 N -0.283 5.283 10 C 0.010 3.990 11 C -0.213 4.213 12 C 0.149 3.851 13 N -0.846 5.846 14 C -0.096 4.096 15 C -0.056 4.056 16 C -0.160 4.160 17 C -0.041 4.041 18 Cl -0.099 7.099 19 C -0.089 4.089 20 C 0.064 3.936 21 H 0.287 0.713 22 H 0.148 0.852 23 H 0.021 0.979 24 H 0.070 0.930 25 H 0.340 0.660 26 H 0.330 0.670 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -0.414 -1.854 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.471 4.471 8 H 0.140 0.860 9 N 0.055 4.945 10 C -0.124 4.124 11 C -0.221 4.221 12 C 0.019 3.981 13 N -0.375 5.375 14 C -0.102 4.102 15 C -0.075 4.075 16 C -0.181 4.181 17 C -0.069 4.069 18 Cl -0.071 7.071 19 C -0.110 4.110 20 C -0.048 4.048 21 H 0.097 0.903 22 H 0.165 0.835 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.717 -1.045 -1.242 8.867 hybrid contribution -0.424 1.658 -0.218 1.725 sum 8.293 0.612 -1.460 8.443 Atomic orbital electron populations 1.69722 1.06334 1.29609 1.40290 1.25304 0.95490 0.99368 0.94120 0.86691 0.81254 0.81758 0.78906 1.19578 1.20817 1.17080 1.19503 0.82547 0.98331 1.46733 0.85953 1.40310 1.07539 1.15023 1.31587 1.21365 0.93632 0.96954 1.00462 1.19526 0.94214 0.98778 1.09586 1.19788 0.96995 0.92857 0.88504 1.58782 1.14516 1.59152 1.05035 1.18748 0.92819 0.96385 1.02258 1.20183 0.97019 0.93023 0.97308 1.20402 0.95908 0.99145 1.02612 1.20116 0.95509 0.89979 1.01289 1.98294 1.98516 1.38286 1.71968 1.19671 0.97796 0.93017 1.00472 1.17936 0.89281 0.94296 1.03292 0.90270 0.83495 0.96063 0.91204 0.84752 0.85862 0.86367 0.86438 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.73 13.96 55.49 0.77 -20.96 15 2 C 0.07 1.76 5.44 -17.49 -0.10 1.67 15 3 Si 0.89 19.34 24.67 -169.99 -4.19 15.15 15 4 H -0.27 -5.52 6.67 56.52 0.38 -5.15 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 6 H -0.25 -5.52 6.71 56.52 0.38 -5.14 15 7 C -0.34 -8.97 10.35 -14.92 -0.15 -9.12 15 8 H 0.12 3.34 8.06 -52.49 -0.42 2.92 15 9 N -0.28 -6.90 2.76 -59.73 -0.16 -7.06 15 10 C 0.01 0.23 8.25 -16.62 -0.14 0.09 15 11 C -0.21 -4.34 5.83 -102.61 -0.60 -4.94 15 12 C 0.15 2.40 7.31 -4.98 -0.04 2.37 15 13 N -0.85 -12.11 9.61 -11.41 -0.11 -12.22 15 14 C -0.10 -2.04 6.35 -105.09 -0.67 -2.71 15 15 C -0.06 -1.05 10.10 -39.28 -0.40 -1.44 15 16 C -0.16 -2.84 9.80 -39.53 -0.39 -3.23 15 17 C -0.04 -0.77 6.32 -39.44 -0.25 -1.02 15 18 Cl -0.10 -1.63 28.93 -51.86 -1.50 -3.13 15 19 C -0.09 -1.88 9.71 -39.40 -0.38 -2.27 15 20 C 0.06 1.47 6.75 -83.84 -0.57 0.90 15 21 H 0.29 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.15 3.15 4.39 -52.49 -0.23 2.92 15 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.34 4.87 8.99 -39.29 -0.35 4.52 15 26 H 0.33 3.69 9.08 -39.29 -0.36 3.34 15 27 H 0.12 1.91 8.06 -52.49 -0.42 1.49 15 28 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 29 H 0.12 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -26.61 265.91 -7.52 -34.13 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -2.66 Total: 9.78 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.67 Total: -19.70 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.50 Total: -40.24 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.19 Total: 15.15 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.50 Total: -3.13 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.61 -7.52 -34.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132427917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.100 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds