Wall clock time and date at job start Mon Mar 30 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47127 * 274.07849 * 3 2 1 5 5 H 1.48494 * 109.47208 * 34.07902 * 3 2 1 6 6 H 1.48508 * 109.46751 * 154.08000 * 3 2 1 7 7 C 1.38849 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00306 * 340.78930 * 7 2 1 9 9 N 1.37214 * 119.99439 * 160.78261 * 7 2 1 10 10 C 1.37018 * 125.09347 * 338.48144 * 9 7 2 11 11 C 1.34295 * 109.92450 * 180.27198 * 10 9 7 12 12 C 1.50704 * 126.47030 * 179.79833 * 11 10 9 13 13 N 1.46894 * 109.47216 * 259.97108 * 12 11 10 14 14 C 1.46679 * 107.05800 * 359.77145 * 11 10 9 15 15 C 1.39515 * 133.95006 * 179.97438 * 14 11 10 16 16 C 1.37766 * 119.67097 * 180.02562 * 15 14 11 17 17 C 1.38848 * 120.35607 * 0.05020 * 16 15 14 18 18 Cl 1.73604 * 119.69320 * 179.97438 * 17 16 15 19 19 C 1.38012 * 120.61597 * 359.97438 * 17 16 15 20 20 C 1.38118 * 125.08718 * 158.35870 * 9 7 2 21 21 H 0.97001 * 120.00082 * 359.97438 * 1 2 3 22 22 H 1.07995 * 125.03801 * 0.03129 * 10 9 7 23 23 H 1.08998 * 109.47417 * 19.97496 * 12 11 10 24 24 H 1.09005 * 109.47095 * 139.97334 * 12 11 10 25 25 H 1.00902 * 110.99639 * 56.04439 * 13 12 11 26 26 H 1.00899 * 111.00344 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.16570 * 0.02562 * 15 14 11 28 28 H 1.08004 * 119.81910 * 180.02562 * 16 15 14 29 29 H 1.07996 * 120.04623 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4096 2.0963 -1.3965 5 1 1.4916 2.6262 0.7845 6 1 3.5865 1.4168 0.6120 7 6 2.0087 -1.2025 0.0005 8 1 1.5138 -2.1117 0.3087 9 7 3.3235 -1.2357 -0.3906 10 6 3.9358 -0.2943 -1.1755 11 6 5.2209 -0.6298 -1.3743 12 6 6.2327 0.1397 -2.1837 13 7 6.3731 -0.4794 -3.5084 14 6 5.4539 -1.8862 -0.6542 15 6 6.5640 -2.7143 -0.4860 16 6 6.4524 -3.8587 0.2730 17 6 5.2428 -4.1906 0.8684 18 17 5.1213 -5.6371 1.8207 19 6 4.1361 -3.3813 0.7104 20 6 4.2284 -2.2220 -0.0500 21 1 -0.4850 0.8400 0.0004 22 1 3.4552 0.5851 -1.5781 23 1 5.8983 1.1708 -2.2981 24 1 7.1950 0.1245 -1.6718 25 1 5.4815 -0.5358 -3.9774 26 1 7.0463 0.0189 -4.0710 27 1 7.5061 -2.4596 -0.9484 28 1 7.3103 -4.5013 0.4051 29 1 3.1997 -3.6484 1.1773 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132427917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:04 Heat of formation + Delta-G solvation = 33.478765 kcal Electronic energy + Delta-G solvation = -15685.754146 eV Core-core repulsion = 13020.112950 eV Total energy + Delta-G solvation = -2665.641196 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.20007 -38.41350 -36.95218 -36.09273 -34.80392 -32.48625 -30.94038 -29.62974 -27.23900 -25.11224 -23.55366 -22.40848 -20.95734 -19.51358 -17.73775 -17.60850 -17.00881 -16.37490 -15.95042 -15.73508 -15.15213 -15.11640 -14.71938 -14.59622 -14.12024 -13.79249 -13.74270 -13.14600 -12.88238 -12.60378 -12.30656 -12.09742 -11.89648 -11.83977 -11.61866 -11.08290 -10.38348 -9.46392 -9.10689 -8.87657 -8.63520 -6.37304 0.17632 0.68974 1.07863 1.23221 1.25243 1.34532 1.74326 1.96698 2.51179 2.73308 3.05973 3.83755 3.98812 4.03432 4.22924 4.30928 4.38171 4.66929 4.75337 4.80171 4.89517 4.98385 5.21437 5.31933 5.44056 5.66762 5.69282 5.96211 6.08539 6.28162 6.35251 6.78717 6.86715 7.17115 8.25293 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.009241 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.784996 B = 3029.214123 C = 4312.249879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.245 1.245 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.311 5.311 10 C -0.011 4.011 11 C -0.196 4.196 12 C 0.150 3.850 13 N -0.848 5.848 14 C -0.114 4.114 15 C -0.047 4.047 16 C -0.154 4.154 17 C -0.029 4.029 18 Cl -0.076 7.076 19 C -0.122 4.122 20 C 0.040 3.960 21 H 0.293 0.707 22 H 0.153 0.847 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.340 0.660 26 H 0.351 0.649 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.530 0.020 -2.706 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.170 1.170 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.103 0.897 9 N 0.024 4.976 10 C -0.143 4.143 11 C -0.204 4.204 12 C 0.020 3.980 13 N -0.379 5.379 14 C -0.120 4.120 15 C -0.065 4.065 16 C -0.174 4.174 17 C -0.058 4.058 18 Cl -0.047 7.047 19 C -0.143 4.143 20 C -0.071 4.071 21 H 0.103 0.897 22 H 0.170 0.830 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.152 0.848 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.150 -0.613 -2.117 12.348 hybrid contribution -1.294 1.280 0.061 1.821 sum 10.856 0.667 -2.056 11.069 Atomic orbital electron populations 1.69786 1.07647 1.30739 1.42466 1.25980 0.96080 1.02154 0.93574 0.85790 0.79303 0.77783 0.80079 1.17004 1.20159 1.18031 1.19242 0.84028 0.97589 1.48375 0.89659 1.40283 1.07090 1.16540 1.33642 1.21699 0.94533 0.97115 1.00909 1.20098 0.94069 0.98091 1.08157 1.19854 0.96399 0.92880 0.88899 1.58673 1.15115 1.59472 1.04679 1.19165 0.92956 0.97359 1.02497 1.20569 0.97263 0.92241 0.96459 1.20828 0.96224 0.99189 1.01163 1.20343 0.95194 0.89971 1.00254 1.98305 1.98505 1.36641 1.71246 1.19743 0.98454 0.94020 1.02129 1.18458 0.90227 0.94535 1.03892 0.89674 0.83002 0.94639 0.89532 0.84804 0.83493 0.83062 0.82814 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.00 13.96 21.65 0.30 -47.70 15 2 C 0.03 1.59 5.44 84.90 0.46 2.05 15 3 Si 0.95 40.39 24.67 68.60 1.69 42.08 15 4 H -0.24 -9.37 6.67 99.48 0.66 -8.71 15 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.26 -11.17 6.71 99.48 0.67 -10.50 15 7 C -0.37 -20.27 10.35 84.00 0.87 -19.40 15 8 H 0.09 5.14 8.06 -2.91 -0.02 5.12 15 9 N -0.31 -15.66 2.76 -342.89 -0.95 -16.61 15 10 C -0.01 -0.47 8.25 82.98 0.68 0.22 15 11 C -0.20 -7.59 5.83 -18.56 -0.11 -7.70 15 12 C 0.15 4.28 7.31 85.56 0.63 4.90 15 13 N -0.85 -21.14 9.61 -190.01 -1.83 -22.96 15 14 C -0.11 -4.64 6.35 -20.17 -0.13 -4.77 15 15 C -0.05 -1.56 10.10 22.47 0.23 -1.33 15 16 C -0.15 -4.90 9.80 22.30 0.22 -4.68 15 17 C -0.03 -1.07 6.32 22.36 0.14 -0.93 15 18 Cl -0.08 -2.35 28.93 -2.72 -0.08 -2.43 15 19 C -0.12 -5.31 9.71 22.39 0.22 -5.09 15 20 C 0.04 1.88 6.75 38.92 0.26 2.15 15 21 H 0.29 14.55 8.31 -92.71 -0.77 13.78 15 22 H 0.15 6.37 4.39 -2.91 -0.01 6.36 15 23 H 0.04 0.93 8.14 -2.39 -0.02 0.91 15 24 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 25 H 0.34 8.74 8.99 -89.69 -0.81 7.94 15 26 H 0.35 6.40 9.08 -89.69 -0.81 5.58 15 27 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 29 H 0.11 4.80 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -59.64 265.91 2.12 -57.52 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.50 Total: 24.68 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.47 Total: -34.59 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.47 Total: -87.27 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.69 Total: 42.08 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -59.64 2.12 -57.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132427917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.003 kcal (2) G-P(sol) polarization free energy of solvation -59.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds