Wall clock time and date at job start Mon Mar 30 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30977 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99899 * 3 2 1 5 5 H 1.48496 * 109.47029 * 29.99916 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99746 * 3 2 1 7 7 C 1.39815 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00554 * 179.72483 * 7 2 1 9 9 C 1.40889 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.41767 * 126.62753 * 0.02562 * 9 7 2 11 11 N 1.30205 * 108.50582 * 180.02562 * 10 9 7 12 12 N 1.39852 * 109.68778 * 0.02562 * 11 10 9 13 13 H 0.97006 * 125.79108 * 180.02562 * 12 11 10 14 14 C 1.36274 * 108.41520 * 359.72538 * 12 11 10 15 15 C 1.47055 * 126.67480 * 180.26242 * 14 12 11 16 16 C 1.40191 * 120.21520 * 269.91570 * 15 14 12 17 17 F 1.35102 * 120.10517 * 0.02562 * 16 15 14 18 18 C 1.38094 * 119.78456 * 179.76921 * 16 15 14 19 19 C 1.38402 * 120.21316 * 0.49307 * 18 16 15 20 20 C 1.38412 * 120.43033 * 359.78208 * 19 18 16 21 21 C 1.38100 * 120.21018 * 359.95584 * 20 19 18 22 22 F 1.35104 * 120.10616 * 179.97438 * 21 20 19 23 23 H 0.97001 * 120.00413 * 0.02562 * 1 2 3 24 24 H 1.07995 * 125.74559 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.89277 * 180.23154 * 18 16 15 26 26 H 1.08000 * 119.78859 * 179.76499 * 19 18 16 27 27 H 1.08003 * 119.89895 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.4913 2.0464 -1.4001 5 1 1.4412 2.6527 0.7000 6 1 3.5413 1.4403 0.7001 7 6 2.0089 -1.2108 0.0005 8 1 3.0889 -1.2109 -0.0040 9 6 1.3045 -2.4310 0.0005 10 6 -0.1037 -2.5946 -0.0005 11 7 -0.3716 -3.8688 0.0004 12 7 0.8200 -4.6009 0.0027 13 1 0.8915 -5.5683 0.0034 14 6 1.8636 -3.7245 -0.0031 15 6 3.2947 -4.0630 -0.0085 16 6 3.9867 -4.2217 1.2003 17 9 3.3409 -4.0648 2.3765 18 6 5.3294 -4.5442 1.1848 19 6 5.9942 -4.7007 -0.0190 20 6 5.3210 -4.5404 -1.2177 21 6 3.9769 -4.2232 -1.2228 22 9 3.3220 -4.0667 -2.3940 23 1 -0.4851 0.8400 -0.0004 24 1 -0.8316 -1.7968 -0.0010 25 1 5.8634 -4.6706 2.1150 26 1 7.0452 -4.9492 -0.0231 27 1 5.8483 -4.6641 -2.1520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142871646.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:24 Heat of formation + Delta-G solvation = -1.674178 kcal Electronic energy + Delta-G solvation = -17723.278724 eV Core-core repulsion = 14504.316501 eV Total energy + Delta-G solvation = -3218.962223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.40065 -48.37433 -39.16082 -37.99423 -33.58018 -31.66737 -29.99088 -29.56440 -28.21029 -24.90581 -22.70660 -22.29343 -19.97286 -19.32583 -17.87032 -17.28246 -16.63290 -15.81164 -15.41725 -15.13771 -14.82304 -14.71063 -14.70412 -13.89164 -13.20472 -12.79436 -12.78874 -12.36088 -11.95262 -11.57715 -11.49186 -11.21452 -11.18873 -11.07393 -10.47736 -10.17925 -9.38097 -9.05918 -8.42044 -8.29612 -7.92767 -7.30815 -6.57121 -4.10927 1.31293 1.33799 2.92904 3.15137 3.19614 3.30328 3.66471 4.05065 4.26068 4.31990 4.45547 4.79495 4.94855 5.18419 5.30873 5.51603 5.53549 6.08172 6.33773 6.39277 6.39357 6.43142 6.72626 7.09889 7.22710 7.38269 7.55504 8.04986 8.51410 8.77746 8.94498 9.04114 9.41261 10.40550 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.009384 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.129201 B = 2983.241261 C = 3430.083740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.069 0.931 9 C 0.029 3.971 10 C 0.025 3.975 11 N -0.316 5.316 12 N -0.496 5.496 13 H 0.413 0.587 14 C -0.107 4.107 15 C -0.026 4.026 16 C 0.139 3.861 17 F -0.125 7.125 18 C -0.175 4.175 19 C -0.075 4.075 20 C -0.175 4.175 21 C 0.139 3.861 22 F -0.125 7.125 23 H 0.278 0.722 24 H 0.205 0.795 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.897 -5.706 -0.037 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.087 0.913 9 C 0.019 3.981 10 C -0.164 4.164 11 N -0.138 5.138 12 N -0.210 5.210 13 H 0.252 0.748 14 C -0.226 4.226 15 C -0.030 4.030 16 C 0.119 3.881 17 F -0.103 7.103 18 C -0.194 4.194 19 C -0.093 4.093 20 C -0.194 4.194 21 C 0.118 3.882 22 F -0.103 7.103 23 H 0.089 0.911 24 H 0.221 0.779 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.747 -6.300 -0.028 10.779 hybrid contribution 0.910 0.998 -0.012 1.351 sum 9.657 -5.302 -0.040 11.017 Atomic orbital electron populations 1.69426 1.07260 1.28482 1.40667 1.25735 0.94814 1.00941 0.92778 0.86174 0.80098 0.80602 0.78970 1.19664 1.20306 1.18907 1.18675 0.93852 0.89119 1.44526 0.91296 1.18080 0.91483 0.90257 0.98251 1.24995 0.97551 0.92119 1.01712 1.76343 1.06001 1.07069 1.24437 1.45460 1.02612 1.06348 1.66628 0.74770 1.18542 0.84971 0.90907 1.28214 1.17981 0.93063 1.01795 0.90134 1.17835 0.90038 0.99231 0.81041 1.91519 1.81861 1.92566 1.44337 1.21034 0.92796 1.05818 0.99784 1.20728 0.99689 0.98295 0.90587 1.21037 0.92710 1.05852 0.99831 1.17837 0.89921 0.99273 0.81132 1.91520 1.81425 1.92572 1.44773 0.91129 0.77882 0.84649 0.84635 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.58 10.31 55.54 0.57 -21.01 15 2 C 0.07 1.81 5.49 -17.33 -0.10 1.72 15 3 Si 0.92 19.53 29.56 -169.99 -5.02 14.50 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 15 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.43 -11.76 9.17 -37.99 -0.35 -12.11 15 8 H 0.07 1.86 7.78 -52.49 -0.41 1.45 15 9 C 0.03 0.81 5.96 -106.53 -0.63 0.18 15 10 C 0.02 0.68 10.89 -16.89 -0.18 0.50 15 11 N -0.32 -8.15 12.57 30.92 0.39 -7.76 15 12 N -0.50 -11.70 7.38 33.88 0.25 -11.45 15 13 H 0.41 8.22 8.96 -182.78 -1.64 6.59 15 14 C -0.11 -2.64 6.04 -81.30 -0.49 -3.13 15 15 C -0.03 -0.54 5.54 -104.85 -0.58 -1.12 15 16 C 0.14 2.61 7.29 -38.90 -0.28 2.33 15 17 F -0.12 -2.57 16.84 2.25 0.04 -2.53 15 18 C -0.18 -2.50 10.01 -39.57 -0.40 -2.90 15 19 C -0.07 -0.92 10.04 -39.46 -0.40 -1.32 15 20 C -0.18 -2.50 10.01 -39.57 -0.40 -2.89 15 21 C 0.14 2.60 7.29 -38.90 -0.28 2.32 15 22 F -0.12 -2.56 16.84 2.25 0.04 -2.53 15 23 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 24 H 0.21 5.58 5.74 -52.49 -0.30 5.28 15 25 H 0.14 1.54 8.06 -52.48 -0.42 1.12 15 26 H 0.14 1.15 8.06 -52.49 -0.42 0.72 15 27 H 0.14 1.54 8.06 -52.48 -0.42 1.12 15 LS Contribution 257.49 15.07 3.88 3.88 Total: -1.00 -29.95 257.49 -6.70 -36.64 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -2.75 Total: 6.69 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.09 Total: -16.44 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 1.21 Total: -40.22 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.08 Total: -5.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.95 -6.70 -36.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142871646.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.971 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds