Wall clock time and date at job start Mon Mar 30 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38663 * 120.11982 * 2 1 4 4 C 1.41361 * 119.79878 * 179.97438 * 3 2 1 5 5 C 1.40564 * 119.29357 * 0.02562 * 4 3 2 6 6 C 1.36325 * 119.86660 * 0.02562 * 5 4 3 7 7 C 1.38109 * 120.11866 * 179.71998 * 2 1 3 8 8 Cl 1.73597 * 119.73515 * 0.02562 * 7 2 1 9 9 N 1.33956 * 107.53283 * 179.97438 * 4 3 2 10 10 C 1.32479 * 109.79331 * 0.02562 * 9 4 3 11 11 C 1.40148 * 125.30843 * 180.02562 * 10 9 4 12 12 H 1.08000 * 120.00007 * 179.97438 * 11 10 9 13 13 C 1.40341 * 119.99822 * 359.97332 * 11 10 9 14 14 N 1.30591 * 120.00111 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47053 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47066 * 120.00125 * 15 13 11 18 18 H 1.48503 * 109.47139 * 240.00537 * 15 13 11 19 19 N 1.37876 * 109.38809 * 0.02562 * 10 9 4 20 20 C 1.46497 * 126.54625 * 179.97438 * 19 10 9 21 21 H 1.09001 * 109.46953 * 89.99885 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99482 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00113 * 1 2 3 24 24 H 1.08001 * 120.06873 * 180.02562 * 5 4 3 25 25 H 1.07998 * 119.63079 * 180.02562 * 6 5 4 26 26 H 0.97000 * 120.00327 * 179.97438 * 14 13 11 27 27 H 1.08998 * 109.47472 * 270.00209 * 20 19 10 28 28 H 1.09001 * 109.47094 * 30.00091 * 20 19 10 29 29 H 1.09003 * 109.47472 * 149.99961 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2029 1.1994 0.0000 4 6 3.6165 1.1915 0.0005 5 6 4.2974 -0.0382 0.0005 6 6 3.5920 -1.2048 -0.0005 7 6 2.2001 -1.1946 0.0058 8 17 1.3283 -2.6958 0.0125 9 7 4.0272 2.4665 -0.0001 10 6 2.9782 3.2757 -0.0005 11 6 3.0354 4.6760 -0.0018 12 1 2.1229 5.2537 -0.0024 13 6 4.2784 5.3275 -0.0022 14 7 5.3818 4.6289 -0.0019 15 14 4.3547 7.1939 -0.0046 16 1 2.9760 7.7457 -0.0052 17 1 5.0740 7.6615 1.2075 18 1 5.0747 7.6584 -1.2175 19 7 1.8214 2.5255 0.0005 20 6 0.4491 3.0383 0.0010 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 5.3772 -0.0589 0.0014 25 1 4.1190 -2.1475 -0.0001 26 1 6.2410 5.0792 -0.0026 27 1 0.1093 3.1660 1.0287 28 1 0.4200 3.9989 -0.5133 29 1 -0.2031 2.3315 -0.5121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213701891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:18 Heat of formation + Delta-G solvation = 50.866625 kcal Electronic energy + Delta-G solvation = -15781.579528 eV Core-core repulsion = 13116.692326 eV Total energy + Delta-G solvation = -2664.887202 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56270 -36.88260 -35.29299 -33.82279 -33.30118 -30.86259 -28.81256 -27.08256 -25.96166 -24.83978 -21.41175 -20.77697 -19.18495 -17.12238 -16.35386 -15.85180 -14.87762 -14.68390 -14.63938 -13.64539 -13.15343 -13.03334 -12.64971 -12.46855 -12.22869 -11.94135 -11.69404 -11.65531 -11.37579 -10.99624 -10.77966 -10.66920 -10.37471 -10.10042 -10.07555 -9.43128 -8.93204 -8.06414 -7.35061 -6.90401 -6.79161 -4.74722 1.97011 2.48861 2.90755 2.92684 2.97393 3.01415 3.71984 3.95224 4.04338 4.75321 5.35531 5.44085 5.49555 5.58944 5.69823 5.83803 5.96989 6.03958 6.11121 6.24103 6.38231 6.44461 6.64238 6.86361 7.01362 7.25909 7.32233 7.49436 7.67408 7.84361 8.13657 8.50203 8.87423 9.79375 10.09492 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.006287 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.909551 B = 4452.858360 C = 5078.315412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C 0.005 3.995 4 C 0.119 3.881 5 C -0.125 4.125 6 C -0.105 4.105 7 C -0.095 4.095 8 Cl -0.107 7.107 9 N -0.532 5.532 10 C 0.419 3.581 11 C -0.434 4.434 12 H 0.090 0.910 13 C 0.075 3.925 14 N -0.711 5.711 15 Si 0.921 3.079 16 H -0.260 1.260 17 H -0.270 1.270 18 H -0.270 1.270 19 N -0.540 5.540 20 C 0.096 3.904 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.281 0.719 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -2.925 -0.089 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.064 4.064 3 C -0.104 4.104 4 C -0.010 4.010 5 C -0.146 4.146 6 C -0.126 4.126 7 C -0.124 4.124 8 Cl -0.079 7.079 9 N -0.255 5.255 10 C 0.184 3.816 11 C -0.471 4.471 12 H 0.108 0.892 13 C -0.153 4.153 14 N -0.333 5.333 15 Si 0.744 3.256 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.236 5.236 20 C -0.047 4.047 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.335 -2.683 -0.087 5.973 hybrid contribution -0.910 0.413 0.006 0.999 sum -6.245 -2.271 -0.082 6.645 Atomic orbital electron populations 1.20852 0.92323 1.02293 1.01523 1.18126 0.94410 0.89127 1.04700 1.18419 0.95778 0.84613 1.11551 1.19635 0.89293 0.94225 0.97879 1.19663 0.98719 0.89007 1.07221 1.20055 0.91299 0.97667 1.03605 1.19771 0.91256 0.83964 1.17374 1.98245 1.77629 1.34265 1.97747 1.71414 1.25221 0.96586 1.32309 1.20483 0.77589 0.93112 0.90391 1.18600 0.94470 0.87155 1.46916 0.89198 1.25906 0.94796 1.01152 0.93436 1.69973 0.98573 1.37515 1.27216 0.86055 0.79723 0.80952 0.78861 1.18337 1.19531 1.19529 1.45345 1.06548 1.03752 1.67957 1.21652 0.81835 0.99971 1.01272 0.92037 0.91517 0.92058 0.86374 0.86654 0.90780 0.93050 0.90640 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.52 36.01 0.31 -1.56 15 2 C -0.06 -1.21 5.89 -104.51 -0.62 -1.83 15 3 C 0.00 0.11 6.78 -83.75 -0.57 -0.46 15 4 C 0.12 3.05 7.21 -84.88 -0.61 2.44 15 5 C -0.12 -2.77 10.07 -39.39 -0.40 -3.17 15 6 C -0.10 -2.07 9.74 -39.92 -0.39 -2.46 15 7 C -0.09 -1.86 6.33 -39.27 -0.25 -2.11 15 8 Cl -0.11 -1.77 27.25 -51.86 -1.41 -3.18 15 9 N -0.53 -14.94 9.33 -10.30 -0.10 -15.04 15 10 C 0.42 11.05 7.41 -155.66 -1.15 9.89 15 11 C -0.43 -10.78 8.99 -38.07 -0.34 -11.13 15 12 H 0.09 2.01 7.10 -52.49 -0.37 1.64 15 13 C 0.08 1.80 5.50 -17.29 -0.10 1.71 15 14 N -0.71 -18.33 11.85 55.57 0.66 -17.67 15 15 Si 0.92 17.31 29.56 -169.99 -5.03 12.28 15 16 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 17 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 19 N -0.54 -12.46 3.26 -120.85 -0.39 -12.85 15 20 C 0.10 1.68 9.70 59.85 0.58 2.26 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.02 6.88 -51.93 -0.36 0.66 15 23 H 0.06 0.95 5.63 -51.93 -0.29 0.66 15 24 H 0.12 2.47 8.06 -52.49 -0.42 2.04 15 25 H 0.12 1.94 8.06 -52.49 -0.42 1.52 15 26 H 0.28 6.48 8.29 -40.82 -0.34 6.14 15 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.07 1.23 7.32 -51.93 -0.38 0.85 15 29 H 0.07 1.05 5.88 -51.93 -0.31 0.74 15 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -28.92 262.21 -8.38 -37.31 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.53 Total: 1.61 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.53 Total: -6.40 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.17 Total: -45.56 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.41 Total: -3.18 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.92 -8.38 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213701891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.173 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds