Wall clock time and date at job start Mon Mar 30 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38663 * 120.11982 * 2 1 4 4 C 1.41361 * 119.79878 * 179.97438 * 3 2 1 5 5 C 1.40564 * 119.29357 * 0.02562 * 4 3 2 6 6 C 1.36325 * 119.86660 * 0.02562 * 5 4 3 7 7 C 1.38109 * 120.11866 * 179.71998 * 2 1 3 8 8 Cl 1.73597 * 119.73515 * 0.02562 * 7 2 1 9 9 N 1.33956 * 107.53283 * 179.97438 * 4 3 2 10 10 C 1.32479 * 109.79331 * 0.02562 * 9 4 3 11 11 C 1.40148 * 125.30843 * 180.02562 * 10 9 4 12 12 H 1.08000 * 120.00007 * 179.97438 * 11 10 9 13 13 C 1.40341 * 119.99822 * 359.97332 * 11 10 9 14 14 N 1.30591 * 120.00111 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47053 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47066 * 120.00125 * 15 13 11 18 18 H 1.48503 * 109.47139 * 240.00537 * 15 13 11 19 19 N 1.37876 * 109.38809 * 0.02562 * 10 9 4 20 20 C 1.46497 * 126.54625 * 179.97438 * 19 10 9 21 21 H 1.09001 * 109.46953 * 89.99885 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99482 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00113 * 1 2 3 24 24 H 1.08001 * 120.06873 * 180.02562 * 5 4 3 25 25 H 1.07998 * 119.63079 * 180.02562 * 6 5 4 26 26 H 0.97000 * 120.00327 * 179.97438 * 14 13 11 27 27 H 1.08998 * 109.47472 * 270.00209 * 20 19 10 28 28 H 1.09001 * 109.47094 * 30.00091 * 20 19 10 29 29 H 1.09003 * 109.47472 * 149.99961 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2029 1.1994 0.0000 4 6 3.6165 1.1915 0.0005 5 6 4.2974 -0.0382 0.0005 6 6 3.5920 -1.2048 -0.0005 7 6 2.2001 -1.1946 0.0058 8 17 1.3283 -2.6958 0.0125 9 7 4.0272 2.4665 -0.0001 10 6 2.9782 3.2757 -0.0005 11 6 3.0354 4.6760 -0.0018 12 1 2.1229 5.2537 -0.0024 13 6 4.2784 5.3275 -0.0022 14 7 5.3818 4.6289 -0.0019 15 14 4.3547 7.1939 -0.0046 16 1 2.9760 7.7457 -0.0052 17 1 5.0740 7.6615 1.2075 18 1 5.0747 7.6584 -1.2175 19 7 1.8214 2.5255 0.0005 20 6 0.4491 3.0383 0.0010 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 5.3772 -0.0589 0.0014 25 1 4.1190 -2.1475 -0.0001 26 1 6.2410 5.0792 -0.0026 27 1 0.1093 3.1660 1.0287 28 1 0.4200 3.9989 -0.5133 29 1 -0.2031 2.3315 -0.5121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213701891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:18 Heat of formation + Delta-G solvation = 35.036186 kcal Electronic energy + Delta-G solvation = -15782.265988 eV Core-core repulsion = 13116.692326 eV Total energy + Delta-G solvation = -2665.573661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.29162 -38.48721 -36.82752 -35.53184 -34.98247 -32.44890 -30.58670 -28.59598 -27.72116 -26.36217 -23.12412 -22.47825 -20.89080 -18.89510 -18.00682 -17.53311 -16.52258 -16.31258 -16.21094 -15.18821 -14.67341 -14.54901 -14.24250 -13.89927 -13.74753 -13.52410 -13.31653 -13.10297 -12.87792 -12.51554 -12.50409 -12.10694 -11.87306 -11.67610 -11.56443 -11.09998 -10.64857 -9.90717 -9.09256 -8.59923 -8.54232 -6.60152 0.27833 0.81189 1.36979 1.43187 1.43228 1.60049 2.15542 2.22968 2.43832 3.01948 3.52623 3.84483 4.06556 4.14959 4.25298 4.45428 4.50045 4.63968 4.71743 4.75231 4.81444 4.90251 5.11831 5.16561 5.38548 5.56566 5.61243 5.79605 5.99834 6.08904 6.38616 6.71452 7.11817 7.97845 8.38286 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.006287 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.909551 B = 4452.858360 C = 5078.315412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.063 4.063 3 C -0.011 4.011 4 C 0.067 3.933 5 C -0.138 4.138 6 C -0.098 4.098 7 C -0.092 4.092 8 Cl -0.071 7.071 9 N -0.580 5.580 10 C 0.390 3.610 11 C -0.461 4.461 12 H 0.108 0.892 13 C 0.029 3.971 14 N -0.764 5.764 15 Si 1.004 2.996 16 H -0.245 1.245 17 H -0.268 1.268 18 H -0.267 1.267 19 N -0.542 5.542 20 C 0.089 3.911 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.147 0.853 26 H 0.285 0.715 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -3.444 -0.115 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.120 4.120 4 C -0.060 4.060 5 C -0.159 4.159 6 C -0.119 4.119 7 C -0.121 4.121 8 Cl -0.042 7.042 9 N -0.305 5.305 10 C 0.153 3.847 11 C -0.499 4.499 12 H 0.126 0.874 13 C -0.194 4.194 14 N -0.387 5.387 15 Si 0.822 3.178 16 H -0.167 1.167 17 H -0.192 1.192 18 H -0.192 1.192 19 N -0.237 5.237 20 C -0.053 4.053 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.137 0.863 25 H 0.165 0.835 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.494 -3.254 -0.113 8.171 hybrid contribution -0.336 0.284 0.015 0.440 sum -7.829 -2.970 -0.098 8.374 Atomic orbital electron populations 1.20909 0.89251 1.03559 1.02893 1.18576 0.96695 0.88194 1.03230 1.18738 0.95329 0.85775 1.12145 1.20162 0.91259 0.94427 1.00191 1.19885 0.99135 0.89161 1.07760 1.20367 0.91741 0.97906 1.01911 1.20032 0.91630 0.85422 1.15009 1.98259 1.76755 1.31682 1.97507 1.71275 1.27299 0.98073 1.33860 1.20860 0.78621 0.93897 0.91346 1.19073 0.95756 0.87115 1.47917 0.87434 1.27022 0.93888 1.06452 0.92019 1.70108 0.99452 1.40022 1.29114 0.84843 0.80291 0.73899 0.78725 1.16738 1.19246 1.19211 1.45538 1.07693 1.03366 1.67144 1.21972 0.79555 1.00968 1.02764 0.90417 0.90004 0.91094 0.86317 0.83512 0.90408 0.91520 0.89776 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.25 8.52 71.24 0.61 -2.64 15 2 C -0.06 -2.45 5.89 -19.79 -0.12 -2.57 15 3 C -0.01 -0.53 6.78 39.04 0.26 -0.27 15 4 C 0.07 3.56 7.21 40.16 0.29 3.85 15 5 C -0.14 -6.28 10.07 22.39 0.23 -6.05 15 6 C -0.10 -3.74 9.74 22.05 0.21 -3.52 15 7 C -0.09 -3.40 6.33 22.47 0.14 -3.25 15 8 Cl -0.07 -2.08 27.25 -2.72 -0.07 -2.15 15 9 N -0.58 -34.28 9.33 -186.49 -1.74 -36.02 15 10 C 0.39 21.29 7.41 133.67 0.99 22.28 15 11 C -0.46 -23.46 8.99 23.25 0.21 -23.25 15 12 H 0.11 4.81 7.10 -2.91 -0.02 4.79 15 13 C 0.03 1.44 5.50 85.39 0.47 1.91 15 14 N -0.76 -41.27 11.85 21.89 0.26 -41.01 15 15 Si 1.00 35.75 29.56 68.60 2.03 37.78 15 16 H -0.24 -7.99 7.11 99.48 0.71 -7.29 15 17 H -0.27 -9.31 7.11 99.48 0.71 -8.60 15 18 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 19 N -0.54 -25.17 3.26 -536.27 -1.75 -26.92 15 20 C 0.09 2.97 9.70 127.77 1.24 4.21 15 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.08 2.17 6.88 -2.39 -0.02 2.16 15 23 H 0.07 1.97 5.63 -2.39 -0.01 1.96 15 24 H 0.12 5.18 8.06 -2.91 -0.02 5.15 15 25 H 0.15 4.56 8.06 -2.91 -0.02 4.54 15 26 H 0.29 13.83 8.29 -92.71 -0.77 13.06 15 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.08 2.63 7.32 -2.39 -0.02 2.61 15 29 H 0.09 2.59 5.88 -2.39 -0.01 2.58 15 Total: -1.00 -65.62 262.21 4.45 -61.17 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.18 Total: 16.45 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.54 Total: -9.30 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.23 Total: -103.96 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.15 kcal Total: -65.62 4.45 -61.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213701891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.210 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds