Wall clock time and date at job start Mon Mar 30 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40529 * 120.07920 * 2 1 4 4 N 1.33968 * 133.18254 * 0.27028 * 3 2 1 5 5 C 1.32477 * 109.78520 * 180.02562 * 4 3 2 6 6 C 1.40183 * 125.30514 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99629 * 179.97438 * 6 5 4 8 8 C 1.40346 * 119.99752 * 359.96772 * 6 5 4 9 9 N 1.30589 * 120.00409 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99616 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46976 * 60.00331 * 10 8 6 12 12 H 1.48500 * 109.46733 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47245 * 300.00065 * 10 8 6 14 14 N 1.37851 * 109.39205 * 359.97438 * 5 4 3 15 15 C 1.46498 * 126.53754 * 180.02562 * 14 5 4 16 16 C 1.37995 * 106.91859 * 359.97438 * 14 5 4 17 17 C 1.38724 * 133.82543 * 179.97438 * 16 14 5 18 18 C 1.37950 * 119.77634 * 180.02562 * 17 16 14 19 19 C 1.36445 * 120.07828 * 180.27314 * 2 1 3 20 20 Cl 1.73600 * 119.63293 * 359.70367 * 19 2 1 21 21 H 1.09002 * 109.47675 * 269.72848 * 1 2 3 22 22 H 1.08999 * 109.46863 * 29.72627 * 1 2 3 23 23 H 1.08997 * 109.46942 * 149.72392 * 1 2 3 24 24 H 0.96999 * 120.00237 * 179.97438 * 9 8 6 25 25 H 1.08999 * 109.47293 * 269.95308 * 15 14 5 26 26 H 1.09003 * 109.47377 * 29.96013 * 15 14 5 27 27 H 1.09004 * 109.46998 * 149.95309 * 15 14 5 28 28 H 1.08001 * 120.11506 * 0.02562 * 17 16 14 29 29 H 1.08003 * 119.72180 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2114 1.2160 0.0000 4 7 1.8255 2.4990 0.0046 5 6 2.8901 3.2874 0.0016 6 6 2.8603 4.6889 0.0053 7 1 3.7839 5.2486 0.0028 8 6 1.6302 5.3646 0.0123 9 7 0.5134 4.6878 0.0157 10 14 1.5906 7.2322 0.0166 11 1 2.2745 7.7446 -1.1978 12 1 0.1803 7.6972 0.0245 13 1 2.2853 7.7393 1.2271 14 7 4.0318 2.5149 -0.0047 15 6 5.4138 3.0010 -0.0092 16 6 3.6245 1.1964 -0.0049 17 6 4.2973 -0.0168 -0.0102 18 6 3.5823 -1.1966 -0.0091 19 6 2.1909 -1.1807 -0.0056 20 17 1.3153 -2.6797 -0.0050 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3367 5.1548 0.0209 25 1 5.7527 3.1230 -1.0379 26 1 5.4632 3.9603 0.5060 27 1 6.0538 2.2812 0.5013 28 1 5.3771 -0.0377 -0.0151 29 1 4.1070 -2.1406 -0.0137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213701974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:14 Heat of formation + Delta-G solvation = 48.597511 kcal Electronic energy + Delta-G solvation = -15742.522592 eV Core-core repulsion = 13077.536993 eV Total energy + Delta-G solvation = -2664.985598 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51372 -36.95099 -35.28998 -33.74119 -32.88103 -31.10431 -28.90583 -26.51905 -25.81239 -25.19639 -21.17928 -20.98783 -19.02814 -17.11663 -16.40672 -15.66488 -15.12252 -14.58593 -14.52450 -13.54884 -13.14605 -12.96273 -12.75697 -12.10609 -11.97188 -11.91172 -11.56994 -11.43665 -11.33652 -10.96749 -10.87084 -10.67233 -10.44893 -10.13943 -10.04452 -9.30868 -8.96536 -8.04571 -7.31423 -6.90549 -6.76880 -4.73054 2.03652 2.39885 2.93029 2.94549 2.97302 2.99426 3.71946 4.00361 4.01753 4.74962 5.34370 5.47017 5.50430 5.78456 5.86776 5.98209 6.02851 6.14724 6.28061 6.46594 6.52699 6.58587 6.85777 6.94213 6.99722 7.22160 7.35288 7.53942 7.67518 7.83775 8.13401 8.51883 8.88487 9.80390 10.11693 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.006843 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.013104 B = 4090.889895 C = 4930.455329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.088 4.088 3 C 0.123 3.877 4 N -0.527 5.527 5 C 0.418 3.582 6 C -0.436 4.436 7 H 0.089 0.911 8 C 0.076 3.924 9 N -0.712 5.712 10 Si 0.920 3.080 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.264 1.264 14 N -0.543 5.543 15 C 0.103 3.897 16 C -0.001 4.001 17 C -0.096 4.096 18 C -0.170 4.170 19 C -0.030 4.030 20 Cl -0.104 7.104 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.282 0.718 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -3.063 0.023 5.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.006 4.006 4 N -0.250 5.250 5 C 0.183 3.817 6 C -0.474 4.474 7 H 0.107 0.893 8 C -0.152 4.152 9 N -0.334 5.334 10 Si 0.743 3.257 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.188 1.188 14 N -0.239 5.239 15 C -0.041 4.041 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.191 4.191 19 C -0.059 4.059 20 Cl -0.075 7.075 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.069 -2.812 0.027 4.162 hybrid contribution 0.979 0.406 0.007 1.059 sum 4.047 -2.406 0.034 4.708 Atomic orbital electron populations 1.20509 0.91202 1.02026 1.01377 1.18318 0.95574 0.88770 1.06521 1.19108 0.88999 0.93455 0.99083 1.71373 1.24745 0.96608 1.32301 1.20480 0.77794 0.92877 0.90584 1.18511 0.94486 0.87056 1.47304 0.89344 1.25877 0.94727 1.01099 0.93470 1.69947 0.98476 1.37717 1.27213 0.86177 0.78527 0.81024 0.79925 1.18798 1.19902 1.18811 1.45445 1.06567 1.04079 1.67825 1.21459 0.81271 1.00119 1.01236 1.18917 0.96097 0.85375 1.10563 1.19466 0.97636 0.89300 1.05361 1.20092 0.91267 0.96931 1.10843 1.19798 0.91417 0.84693 1.09966 1.98263 1.77403 1.34421 1.97458 0.92460 0.90974 0.92655 0.90710 0.93022 0.90534 0.92026 0.87612 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.59 36.01 0.35 -1.60 15 2 C -0.09 -2.00 5.90 -104.40 -0.62 -2.61 15 3 C 0.12 3.14 6.89 -84.89 -0.58 2.56 15 4 N -0.53 -14.67 9.33 -10.31 -0.10 -14.77 15 5 C 0.42 10.99 7.41 -155.67 -1.15 9.83 15 6 C -0.44 -10.81 8.99 -38.06 -0.34 -11.16 15 7 H 0.09 1.96 7.09 -52.49 -0.37 1.59 15 8 C 0.08 1.83 5.50 -17.29 -0.10 1.73 15 9 N -0.71 -18.29 11.85 55.57 0.66 -17.63 15 10 Si 0.92 17.33 29.56 -169.99 -5.03 12.31 15 11 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 12 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 13 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 14 N -0.54 -12.52 3.26 -120.84 -0.39 -12.91 15 15 C 0.10 1.77 10.93 59.85 0.65 2.42 15 16 C 0.00 -0.03 6.88 -83.73 -0.58 -0.60 15 17 C -0.10 -1.91 10.04 -39.51 -0.40 -2.31 15 18 C -0.17 -3.26 9.81 -39.35 -0.39 -3.65 15 19 C -0.03 -0.61 6.27 -39.89 -0.25 -0.86 15 20 Cl -0.10 -1.79 27.18 -51.86 -1.41 -3.20 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.07 1.60 8.09 -51.93 -0.42 1.18 15 23 H 0.05 1.01 6.85 -51.93 -0.36 0.66 15 24 H 0.28 6.53 8.29 -40.82 -0.34 6.19 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.08 1.23 7.32 -51.93 -0.38 0.85 15 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 28 H 0.11 1.80 8.06 -52.49 -0.42 1.37 15 29 H 0.12 1.89 8.06 -52.48 -0.42 1.47 15 LS Contribution 268.91 15.07 4.05 4.05 Total: -1.00 -28.73 268.91 -8.39 -37.12 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.78 Total: 1.28 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.40 Total: -6.25 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.17 Total: -45.31 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.41 Total: -3.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.73 -8.39 -37.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213701974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.715 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds