Wall clock time and date at job start Mon Mar 30 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36355 * 120.06304 * 2 1 4 4 C 1.39150 * 120.74473 * 179.80796 * 3 2 1 5 5 Cl 1.73599 * 119.72976 * 180.21393 * 4 3 2 6 6 C 1.38152 * 120.53740 * 0.44804 * 4 3 2 7 7 C 1.38623 * 119.75757 * 359.78927 * 6 4 3 8 8 C 1.40528 * 120.07109 * 180.27209 * 2 1 3 9 9 N 1.33952 * 133.17903 * 359.95659 * 8 2 1 10 10 C 1.32480 * 109.79445 * 180.02562 * 9 8 2 11 11 C 1.40148 * 125.30446 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00467 * 174.03176 * 11 10 9 13 13 C 1.40342 * 119.99732 * 354.03819 * 11 10 9 14 14 N 1.30592 * 120.00162 * 6.04017 * 13 11 10 15 15 Si 1.86807 * 119.99763 * 186.04028 * 13 11 10 16 16 H 1.48499 * 109.46903 * 94.98105 * 15 13 11 17 17 H 1.48500 * 109.46860 * 214.98148 * 15 13 11 18 18 H 1.48500 * 109.47234 * 334.97821 * 15 13 11 19 19 N 1.37885 * 109.39720 * 359.97438 * 10 9 8 20 20 C 1.46496 * 126.54098 * 180.02562 * 19 10 9 21 21 H 1.09004 * 109.47309 * 269.72204 * 1 2 3 22 22 H 1.08997 * 109.47651 * 29.72296 * 1 2 3 23 23 H 1.08999 * 109.46892 * 149.73141 * 1 2 3 24 24 H 1.08006 * 119.62902 * 0.02562 * 3 2 1 25 25 H 1.07994 * 120.12278 * 179.80931 * 6 4 3 26 26 H 0.96997 * 119.99856 * 180.02562 * 14 13 11 27 27 H 1.09003 * 109.46774 * 89.98225 * 20 19 10 28 28 H 1.09001 * 109.46795 * 209.97730 * 20 19 10 29 29 H 1.09004 * 109.47632 * 329.97796 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1801 0.0000 4 6 3.5814 1.1967 0.0040 5 17 4.4243 2.7143 0.0095 6 6 4.2975 0.0152 -0.0012 7 6 3.6250 -1.1969 -0.0061 8 6 2.2111 -1.2161 -0.0058 9 7 1.8251 -2.4988 -0.0111 10 6 2.8894 -3.2876 -0.0147 11 6 2.8591 -4.6888 -0.0201 12 1 3.7773 -5.2485 -0.1200 13 6 1.6354 -5.3646 0.1041 14 7 0.5156 -4.6927 0.1060 15 14 1.6084 -7.2254 0.2667 16 1 1.5544 -7.5959 1.7037 17 1 0.4130 -7.7657 -0.4292 18 1 2.8364 -7.7936 -0.3453 19 7 4.0317 -2.5154 -0.0123 20 6 5.4135 -3.0020 -0.0154 21 1 -0.3634 -0.0050 1.0277 22 1 -0.3634 0.8924 -0.5095 23 1 -0.3633 -0.8876 -0.5180 24 1 1.6450 2.1126 0.0004 25 1 5.3772 0.0359 -0.0012 26 1 -0.3301 -5.1598 0.1923 27 1 5.7553 -3.1186 -1.0438 28 1 6.0522 -2.2852 0.5007 29 1 5.4611 -3.9642 0.4947 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213702139.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:16 Heat of formation + Delta-G solvation = 46.408752 kcal Electronic energy + Delta-G solvation = -15682.243308 eV Core-core repulsion = 13017.162798 eV Total energy + Delta-G solvation = -2665.080510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52085 -36.84600 -35.46561 -33.79441 -32.75409 -31.11861 -28.89080 -26.60742 -25.88496 -25.13947 -21.26021 -20.89006 -19.05666 -17.12128 -16.32860 -15.84182 -14.97949 -14.58517 -14.50160 -13.57023 -13.11387 -12.98427 -12.74557 -12.05888 -12.00433 -11.90565 -11.81604 -11.51625 -11.35179 -11.09011 -10.76308 -10.69977 -10.41798 -10.19869 -9.98502 -9.33466 -8.97429 -8.06990 -7.37842 -6.88779 -6.80181 -4.73958 1.97897 2.46801 2.90781 2.91525 2.96948 3.00148 3.71644 3.96420 4.04027 4.73738 5.32673 5.47058 5.51293 5.72110 5.87178 5.98758 6.05289 6.18999 6.28278 6.36560 6.48485 6.53966 6.78024 6.89398 7.00629 7.26306 7.35151 7.52823 7.67260 7.83944 8.13566 8.49689 8.87000 9.78451 10.08650 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.035553 B = 0.006502 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.366347 B = 4305.510511 C = 5068.809626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.090 4.090 3 C -0.110 4.110 4 C -0.088 4.088 5 Cl -0.110 7.110 6 C -0.094 4.094 7 C 0.003 3.997 8 C 0.121 3.879 9 N -0.528 5.528 10 C 0.419 3.581 11 C -0.435 4.435 12 H 0.090 0.910 13 C 0.076 3.924 14 N -0.711 5.711 15 Si 0.920 3.080 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.261 1.261 19 N -0.543 5.543 20 C 0.103 3.897 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.281 0.719 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 2.853 0.178 4.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.117 4.117 5 Cl -0.081 7.081 6 C -0.116 4.116 7 C -0.105 4.105 8 C -0.009 4.009 9 N -0.251 5.251 10 C 0.184 3.816 11 C -0.472 4.472 12 H 0.108 0.892 13 C -0.152 4.152 14 N -0.332 5.332 15 Si 0.744 3.256 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.184 1.184 19 N -0.239 5.239 20 C -0.041 4.041 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.976 2.594 0.179 3.952 hybrid contribution 1.162 -0.383 0.088 1.226 sum 4.138 2.212 0.266 4.700 Atomic orbital electron populations 1.20449 0.91395 1.01632 1.01179 1.18489 0.95193 0.89529 1.06104 1.19943 0.91357 0.97129 1.04716 1.19836 0.91540 0.84181 1.16147 1.98259 1.78919 1.33162 1.97799 1.19262 0.97780 0.88598 1.05997 1.18579 0.95923 0.85041 1.10961 1.19434 0.89158 0.93901 0.98404 1.71375 1.24794 0.96819 1.32111 1.20488 0.77815 0.92889 0.90447 1.18563 0.95086 0.87072 1.46480 0.89232 1.25892 0.94676 1.01136 0.93499 1.69964 0.98500 1.37648 1.27103 0.86102 0.79229 0.80937 0.79373 1.19241 1.19779 1.18433 1.45413 1.06600 1.03884 1.68018 1.21466 0.81248 1.00180 1.01237 0.92580 0.93263 0.90981 0.86679 0.87516 0.90760 0.93047 0.92000 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 10.02 36.00 0.36 -1.38 15 2 C -0.09 -1.98 5.89 -104.44 -0.62 -2.59 15 3 C -0.11 -2.18 9.37 -39.92 -0.37 -2.56 15 4 C -0.09 -1.74 6.33 -39.27 -0.25 -1.99 15 5 Cl -0.11 -1.83 28.94 -51.86 -1.50 -3.33 15 6 C -0.09 -1.94 9.81 -39.47 -0.39 -2.33 15 7 C 0.00 0.08 6.88 -83.75 -0.58 -0.50 15 8 C 0.12 3.05 6.89 -84.88 -0.58 2.47 15 9 N -0.53 -14.55 9.35 -10.30 -0.10 -14.65 15 10 C 0.42 10.95 7.41 -155.65 -1.15 9.80 15 11 C -0.44 -10.72 8.95 -38.07 -0.34 -11.07 15 12 H 0.09 1.99 7.19 -52.49 -0.38 1.61 15 13 C 0.08 1.81 5.49 -17.29 -0.09 1.71 15 14 N -0.71 -18.06 11.88 55.57 0.66 -17.40 15 15 Si 0.92 17.21 29.57 -169.99 -5.03 12.18 15 16 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 17 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 18 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 19 N -0.54 -12.56 3.26 -120.85 -0.39 -12.95 15 20 C 0.10 1.79 10.92 59.84 0.65 2.44 15 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.05 0.80 8.08 -51.93 -0.42 0.38 15 23 H 0.07 1.53 8.09 -51.93 -0.42 1.11 15 24 H 0.12 1.98 8.06 -52.48 -0.42 1.56 15 25 H 0.11 1.98 8.06 -52.49 -0.42 1.56 15 26 H 0.28 6.41 8.29 -40.82 -0.34 6.07 15 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 29 H 0.08 1.25 7.39 -51.93 -0.38 0.87 15 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -28.40 271.87 -8.47 -36.87 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -2.85 Total: 1.17 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.36 Total: -5.99 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.17 Total: -44.99 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.50 Total: -3.33 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.40 -8.47 -36.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213702139.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.275 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds