Wall clock time and date at job start Mon Mar 30 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36355 * 120.06304 * 2 1 4 4 C 1.39150 * 120.74473 * 179.80796 * 3 2 1 5 5 Cl 1.73599 * 119.72976 * 180.21393 * 4 3 2 6 6 C 1.38152 * 120.53740 * 0.44804 * 4 3 2 7 7 C 1.38623 * 119.75757 * 359.78927 * 6 4 3 8 8 C 1.40528 * 120.07109 * 180.27209 * 2 1 3 9 9 N 1.33952 * 133.17903 * 359.95659 * 8 2 1 10 10 C 1.32480 * 109.79445 * 180.02562 * 9 8 2 11 11 C 1.40148 * 125.30446 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00467 * 174.03176 * 11 10 9 13 13 C 1.40342 * 119.99732 * 354.03819 * 11 10 9 14 14 N 1.30592 * 120.00162 * 6.04017 * 13 11 10 15 15 Si 1.86807 * 119.99763 * 186.04028 * 13 11 10 16 16 H 1.48499 * 109.46903 * 94.98105 * 15 13 11 17 17 H 1.48500 * 109.46860 * 214.98148 * 15 13 11 18 18 H 1.48500 * 109.47234 * 334.97821 * 15 13 11 19 19 N 1.37885 * 109.39720 * 359.97438 * 10 9 8 20 20 C 1.46496 * 126.54098 * 180.02562 * 19 10 9 21 21 H 1.09004 * 109.47309 * 269.72204 * 1 2 3 22 22 H 1.08997 * 109.47651 * 29.72296 * 1 2 3 23 23 H 1.08999 * 109.46892 * 149.73141 * 1 2 3 24 24 H 1.08006 * 119.62902 * 0.02562 * 3 2 1 25 25 H 1.07994 * 120.12278 * 179.80931 * 6 4 3 26 26 H 0.96997 * 119.99856 * 180.02562 * 14 13 11 27 27 H 1.09003 * 109.46774 * 89.98225 * 20 19 10 28 28 H 1.09001 * 109.46795 * 209.97730 * 20 19 10 29 29 H 1.09004 * 109.47632 * 329.97796 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1801 0.0000 4 6 3.5814 1.1967 0.0040 5 17 4.4243 2.7143 0.0095 6 6 4.2975 0.0152 -0.0012 7 6 3.6250 -1.1969 -0.0061 8 6 2.2111 -1.2161 -0.0058 9 7 1.8251 -2.4988 -0.0111 10 6 2.8894 -3.2876 -0.0147 11 6 2.8591 -4.6888 -0.0201 12 1 3.7773 -5.2485 -0.1200 13 6 1.6354 -5.3646 0.1041 14 7 0.5156 -4.6927 0.1060 15 14 1.6084 -7.2254 0.2667 16 1 1.5544 -7.5959 1.7037 17 1 0.4130 -7.7657 -0.4292 18 1 2.8364 -7.7936 -0.3453 19 7 4.0317 -2.5154 -0.0123 20 6 5.4135 -3.0020 -0.0154 21 1 -0.3634 -0.0050 1.0277 22 1 -0.3634 0.8924 -0.5095 23 1 -0.3633 -0.8876 -0.5180 24 1 1.6450 2.1126 0.0004 25 1 5.3772 0.0359 -0.0012 26 1 -0.3301 -5.1598 0.1923 27 1 5.7553 -3.1186 -1.0438 28 1 6.0522 -2.2852 0.5007 29 1 5.4611 -3.9642 0.4947 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213702139.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:15 Heat of formation + Delta-G solvation = 31.496801 kcal Electronic energy + Delta-G solvation = -15682.889938 eV Core-core repulsion = 13017.162798 eV Total energy + Delta-G solvation = -2665.727141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.24549 -38.46410 -36.99030 -35.52887 -34.45285 -32.72948 -30.63742 -28.27619 -27.43315 -26.83365 -22.99617 -22.57598 -20.74100 -18.88345 -18.01419 -17.47365 -16.63473 -16.24096 -16.08364 -15.16056 -14.69623 -14.51383 -14.41956 -13.56511 -13.51460 -13.46547 -13.37551 -13.07907 -12.86271 -12.65008 -12.45078 -12.27043 -11.92861 -11.68564 -11.58391 -10.97309 -10.70186 -9.89518 -9.10174 -8.59572 -8.53628 -6.57510 0.28550 0.80211 1.34890 1.43265 1.44450 1.58928 2.15871 2.24872 2.43797 3.01487 3.51443 3.84111 4.07196 4.20194 4.40224 4.52857 4.59201 4.65750 4.69376 4.76103 4.92380 4.94489 5.09832 5.22948 5.37643 5.56285 5.66601 5.84496 6.00679 6.10547 6.39822 6.72495 7.12059 7.98586 8.38646 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.035553 B = 0.006502 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.366347 B = 4305.510511 C = 5068.809626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.101 4.101 3 C -0.108 4.108 4 C -0.080 4.080 5 Cl -0.075 7.075 6 C -0.096 4.096 7 C -0.014 4.014 8 C 0.070 3.930 9 N -0.570 5.570 10 C 0.388 3.612 11 C -0.462 4.462 12 H 0.106 0.894 13 C 0.032 3.968 14 N -0.761 5.761 15 Si 1.002 2.998 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.248 1.248 19 N -0.547 5.547 20 C 0.096 3.904 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.147 0.853 25 H 0.130 0.870 26 H 0.285 0.715 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 3.672 0.262 6.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.129 4.129 4 C -0.109 4.109 5 Cl -0.047 7.047 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.058 4.058 9 N -0.294 5.294 10 C 0.151 3.849 11 C -0.500 4.500 12 H 0.124 0.876 13 C -0.192 4.192 14 N -0.383 5.383 15 Si 0.821 3.179 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.171 1.171 19 N -0.243 5.243 20 C -0.046 4.046 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.061 0.939 24 H 0.165 0.835 25 H 0.148 0.852 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.324 3.462 0.259 5.545 hybrid contribution 0.839 -0.360 0.055 0.914 sum 5.163 3.103 0.314 6.031 Atomic orbital electron populations 1.20413 0.90079 1.01885 1.01575 1.18927 0.96538 0.89415 1.05592 1.20257 0.91716 0.97458 1.03471 1.20078 0.91922 0.85448 1.13445 1.98276 1.78183 1.30645 1.97552 1.19523 0.98986 0.87872 1.05470 1.18940 0.95724 0.86112 1.11489 1.19994 0.90849 0.94229 1.00698 1.71245 1.26565 0.98199 1.33401 1.20878 0.78810 0.93716 0.91492 1.19018 0.96333 0.87056 1.47561 0.87626 1.26967 0.93777 1.06248 0.92207 1.70092 0.99365 1.40011 1.28855 0.84907 0.79588 0.74118 0.79336 1.18849 1.19453 1.17079 1.45640 1.07839 1.03537 1.67241 1.21772 0.78970 1.01226 1.02664 0.92026 0.89735 0.93883 0.83547 0.85182 0.90398 0.91616 0.89661 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.20 10.02 71.23 0.71 -2.49 15 2 C -0.10 -4.46 5.89 -19.75 -0.12 -4.58 15 3 C -0.11 -4.06 9.37 22.05 0.21 -3.85 15 4 C -0.08 -2.95 6.33 22.47 0.14 -2.81 15 5 Cl -0.08 -2.25 28.94 -2.72 -0.08 -2.32 15 6 C -0.10 -3.82 9.81 22.34 0.22 -3.61 15 7 C -0.01 -0.66 6.88 39.05 0.27 -0.39 15 8 C 0.07 3.64 6.89 40.16 0.28 3.92 15 9 N -0.57 -32.89 9.35 -186.49 -1.74 -34.63 15 10 C 0.39 21.04 7.41 133.67 0.99 22.03 15 11 C -0.46 -23.40 8.95 23.25 0.21 -23.19 15 12 H 0.11 4.73 7.19 -2.91 -0.02 4.71 15 13 C 0.03 1.53 5.49 85.39 0.47 2.00 15 14 N -0.76 -40.41 11.88 21.89 0.26 -40.15 15 15 Si 1.00 35.58 29.57 68.60 2.03 37.61 15 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 17 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 18 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 19 N -0.55 -25.56 3.26 -536.25 -1.75 -27.31 15 20 C 0.10 3.23 10.92 127.77 1.39 4.63 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.08 2.60 8.08 -2.39 -0.02 2.58 15 23 H 0.04 1.89 8.09 -2.39 -0.02 1.87 15 24 H 0.15 4.51 8.06 -2.91 -0.02 4.48 15 25 H 0.13 4.46 8.06 -2.91 -0.02 4.44 15 26 H 0.29 13.64 8.29 -92.71 -0.77 12.88 15 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 29 H 0.09 2.72 7.39 -2.38 -0.02 2.71 15 Total: -1.00 -63.97 271.87 4.66 -59.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.17 Total: 15.84 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 4.77 Total: -8.34 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -3.23 Total: -102.09 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.32 kcal Total: -63.97 4.66 -59.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213702139.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.806 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds