Wall clock time and date at job start Mon Mar 30 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36385 * 119.61151 * 2 1 4 4 C 1.40525 * 119.87098 * 179.97438 * 3 2 1 5 5 N 1.33979 * 133.19330 * 180.02562 * 4 3 2 6 6 C 1.32473 * 109.78874 * 180.02562 * 5 4 3 7 7 C 1.40195 * 125.30166 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99720 * 179.97438 * 7 6 5 9 9 C 1.40347 * 119.99940 * 359.97438 * 7 6 5 10 10 N 1.30581 * 120.00137 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99831 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47404 * 60.00200 * 11 9 7 13 13 H 1.48497 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47394 * 300.00129 * 11 9 7 15 15 N 1.37837 * 109.39586 * 359.97438 * 6 5 4 16 16 C 1.46499 * 126.54351 * 180.02562 * 15 6 5 17 17 C 1.38022 * 106.91664 * 0.02562 * 15 6 5 18 18 C 1.38774 * 133.84932 * 179.97438 * 17 15 6 19 19 Cl 1.73605 * 120.13314 * 0.02562 * 18 17 15 20 20 C 1.38098 * 119.74168 * 179.97438 * 18 17 15 21 21 H 1.08993 * 109.47299 * 89.99978 * 1 2 3 22 22 H 1.08999 * 109.46930 * 210.00383 * 1 2 3 23 23 H 1.09005 * 109.47085 * 329.99529 * 1 2 3 24 24 H 1.08005 * 120.06337 * 359.70729 * 3 2 1 25 25 H 0.96994 * 120.00528 * 179.97438 * 10 9 7 26 26 H 1.09003 * 109.46760 * 269.97691 * 16 15 6 27 27 H 1.08996 * 109.46964 * 29.97613 * 16 15 6 28 28 H 1.08994 * 109.47155 * 149.98066 * 16 15 6 29 29 H 1.08003 * 119.72422 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1857 0.0000 4 6 3.5861 1.1921 0.0005 5 7 4.4987 2.1730 0.0011 6 6 5.7169 1.6523 0.0009 7 6 6.9115 2.3859 0.0019 8 1 7.8611 1.8714 0.0020 9 6 6.8735 3.7889 0.0027 10 7 5.7253 4.4109 0.0030 11 14 8.4653 4.7663 0.0032 12 1 9.2535 4.4295 -1.2095 13 1 8.1545 6.2184 0.0046 14 1 9.2535 4.4281 1.2156 15 7 5.6267 0.2769 0.0008 16 6 6.7441 -0.6705 0.0010 17 6 4.2828 -0.0375 0.0003 18 6 3.5747 -1.2310 -0.0005 19 17 4.4212 -2.7467 -0.0004 20 6 2.1939 -1.2083 -0.0003 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6356 2.1180 -0.0048 25 1 5.6990 5.3805 0.0039 26 1 7.0213 -0.9057 -1.0266 27 1 7.5967 -0.2265 0.5148 28 1 6.4457 -1.5842 0.5150 29 1 1.6430 -2.1374 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213702225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:20 Heat of formation + Delta-G solvation = 31.947496 kcal Electronic energy + Delta-G solvation = -15715.329584 eV Core-core repulsion = 13049.621987 eV Total energy + Delta-G solvation = -2665.707597 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.25423 -38.51844 -37.36812 -35.53574 -34.34520 -32.46765 -30.56223 -28.92881 -27.68671 -26.19196 -23.16202 -21.98288 -21.51298 -18.83288 -17.82131 -17.59913 -16.47963 -16.32058 -16.07884 -15.25228 -14.83350 -14.49321 -14.43778 -13.81391 -13.63643 -13.37367 -13.32148 -13.07388 -12.84136 -12.75554 -12.41788 -12.20534 -12.01695 -11.62021 -11.52293 -11.02664 -10.70917 -9.97883 -9.08330 -8.61637 -8.54514 -6.62196 0.25796 0.81200 1.23457 1.41748 1.45940 1.56516 2.12788 2.22636 2.36409 3.00709 3.50638 3.86661 4.11611 4.13676 4.38308 4.47594 4.53127 4.62621 4.71559 4.81058 4.98565 5.08913 5.12179 5.20096 5.31096 5.51957 5.80437 5.84088 6.00894 6.08204 6.37061 6.70425 7.08174 7.95447 8.37962 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.007562 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.248591 B = 3701.886902 C = 4712.689143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.075 4.075 3 C -0.140 4.140 4 C 0.076 3.924 5 N -0.578 5.578 6 C 0.390 3.610 7 C -0.463 4.463 8 H 0.106 0.894 9 C 0.031 3.969 10 N -0.764 5.764 11 Si 1.004 2.996 12 H -0.254 1.254 13 H -0.270 1.270 14 H -0.254 1.254 15 N -0.542 5.542 16 C 0.093 3.907 17 C -0.022 4.022 18 C -0.016 4.016 19 Cl -0.081 7.081 20 C -0.157 4.157 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.286 0.714 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -7.630 0.090 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.162 4.162 4 C -0.051 4.051 5 N -0.303 5.303 6 C 0.153 3.847 7 C -0.500 4.500 8 H 0.124 0.876 9 C -0.192 4.192 10 N -0.387 5.387 11 Si 0.822 3.178 12 H -0.178 1.178 13 H -0.194 1.194 14 H -0.178 1.178 15 N -0.237 5.237 16 C -0.049 4.049 17 C -0.131 4.131 18 C -0.046 4.046 19 Cl -0.052 7.052 20 C -0.177 4.177 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.087 0.913 24 H 0.132 0.868 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.662 -6.820 0.092 7.020 hybrid contribution 0.991 -0.379 -0.036 1.061 sum -0.671 -7.199 0.055 7.230 Atomic orbital electron populations 1.20706 0.87976 1.03510 1.03040 1.19444 0.97576 0.90749 1.00063 1.19980 0.89704 0.98578 1.07917 1.20063 0.95505 0.89061 1.00506 1.71291 0.97282 1.27494 1.34255 1.20844 0.94545 0.77898 0.91439 1.19013 0.90872 0.91987 1.48173 0.87638 1.26999 1.01798 0.98443 0.91979 1.70082 1.28844 1.10752 1.28993 0.84943 0.75921 0.76520 0.80387 1.17826 1.19429 1.17778 1.45563 1.03963 1.07101 1.67096 1.21873 0.88149 0.92321 1.02524 1.18886 0.85779 0.95398 1.13051 1.19840 0.92377 0.82414 1.10014 1.98265 1.78272 1.31345 1.97320 1.20596 0.89791 0.98920 1.08434 0.90305 0.89746 0.91346 0.86775 0.90332 0.91920 0.89671 0.89836 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.40 9.99 71.24 0.71 -1.68 15 2 C -0.08 -2.72 5.84 -20.12 -0.12 -2.84 15 3 C -0.14 -6.32 9.68 22.39 0.22 -6.10 15 4 C 0.08 4.06 7.21 40.13 0.29 4.35 15 5 N -0.58 -34.56 9.33 -186.53 -1.74 -36.30 15 6 C 0.39 21.84 7.41 133.70 0.99 22.83 15 7 C -0.46 -24.12 8.99 23.26 0.21 -23.91 15 8 H 0.11 4.87 7.10 -2.91 -0.02 4.84 15 9 C 0.03 1.54 5.50 85.39 0.47 2.01 15 10 N -0.76 -41.58 11.85 21.89 0.26 -41.32 15 11 Si 1.00 36.30 29.56 68.60 2.03 38.33 15 12 H -0.25 -8.74 7.11 99.48 0.71 -8.04 15 13 H -0.27 -9.42 7.11 99.48 0.71 -8.71 15 14 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 15 N -0.54 -26.49 3.26 -536.17 -1.75 -28.24 15 16 C 0.09 3.50 10.39 127.77 1.33 4.83 15 17 C -0.02 -1.07 6.83 39.06 0.27 -0.81 15 18 C -0.02 -0.67 6.33 22.36 0.14 -0.53 15 19 Cl -0.08 -2.68 26.30 -2.72 -0.07 -2.75 15 20 C -0.16 -5.56 9.46 22.42 0.21 -5.35 15 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.08 1.70 8.08 -2.39 -0.02 1.68 15 23 H 0.07 1.63 8.07 -2.38 -0.02 1.61 15 24 H 0.11 4.96 8.06 -2.91 -0.02 4.94 15 25 H 0.29 14.02 8.29 -92.71 -0.77 13.25 15 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 27 H 0.08 2.95 7.32 -2.39 -0.02 2.93 15 28 H 0.08 2.84 5.96 -2.39 -0.01 2.82 15 29 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -66.64 266.48 4.62 -62.02 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.18 Total: 15.46 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.72 Total: -7.20 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.23 Total: -105.86 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.07 Total: -2.75 kcal Total: -66.64 4.62 -62.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213702225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.967 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds