Wall clock time and date at job start Mon Mar 30 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47384 * 2 1 4 4 C 1.50702 * 109.47333 * 119.99915 * 2 1 3 5 5 H 1.08002 * 120.00087 * 119.99800 * 4 2 1 6 6 C 1.37876 * 120.00052 * 300.00247 * 4 2 1 7 7 N 1.31514 * 120.00239 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99677 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47100 * 90.00558 * 8 6 4 10 10 H 1.48502 * 109.46698 * 210.00344 * 8 6 4 11 11 H 1.48494 * 109.47366 * 330.00044 * 8 6 4 12 12 C 1.52999 * 109.46988 * 239.99739 * 2 1 3 13 13 C 1.50706 * 109.47138 * 65.00142 * 12 2 1 14 14 N 1.31126 * 126.55051 * 90.25130 * 13 12 2 15 15 C 1.34498 * 105.61182 * 180.12680 * 14 13 12 16 16 C 1.50706 * 126.28438 * 179.90521 * 15 14 13 17 17 F 1.39900 * 109.46715 * 194.70700 * 16 15 14 18 18 F 1.39897 * 109.47068 * 314.70611 * 16 15 14 19 19 F 1.39895 * 109.47042 * 74.70920 * 16 15 14 20 20 N 1.29940 * 107.42758 * 359.63722 * 15 14 13 21 21 O 1.21308 * 110.24948 * 0.22983 * 20 15 14 22 22 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46937 * 300.00059 * 1 2 3 24 24 H 1.08996 * 109.46770 * 59.99934 * 1 2 3 25 25 H 0.96998 * 120.00353 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47307 * 305.00275 * 12 2 1 27 27 H 1.08999 * 109.47313 * 184.99671 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9773 1.9954 3.9070 11 1 0.8491 2.1773 1.4923 12 6 2.0400 -0.7213 -1.2492 13 6 1.6413 0.0570 -2.4766 14 7 2.3369 1.0017 -3.0623 15 6 1.5917 1.4053 -4.1067 16 6 1.9538 2.4813 -5.0979 17 9 0.8155 2.8493 -5.8232 18 9 2.4522 3.5959 -4.4149 19 9 2.9298 1.9974 -5.9756 20 7 0.5047 0.6933 -4.1075 21 8 0.5136 -0.0874 -3.1790 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9033 -0.5280 4.4376 26 1 1.6054 -1.7198 -1.2951 27 1 3.1263 -0.7995 -1.2056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235087874.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:40 Heat of formation + Delta-G solvation = -83.304327 kcal Electronic energy + Delta-G solvation = -18311.652297 eV Core-core repulsion = 14658.381101 eV Total energy + Delta-G solvation = -3653.271196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.49493 -48.02990 -47.97848 -45.88033 -36.40263 -35.74754 -32.99626 -31.48063 -27.87419 -27.52947 -25.30645 -23.86764 -22.36351 -20.14656 -19.09706 -18.96070 -18.46578 -18.05314 -17.03128 -16.76734 -15.04059 -14.82922 -14.81148 -14.39314 -14.28026 -14.11500 -14.10212 -14.00452 -13.14405 -13.01807 -12.65110 -12.37686 -12.18037 -11.96204 -11.34632 -11.31229 -10.82444 -10.55162 -10.23981 -9.94728 -9.51486 -9.26495 -8.69948 -6.22222 -4.24764 0.85033 1.80543 1.83352 2.72976 3.02942 3.18804 3.27366 3.30987 3.32103 3.96313 4.21647 4.28585 4.55513 5.09906 5.36237 5.52078 5.64017 5.81446 6.04099 6.23763 6.39610 6.54234 6.85381 7.19207 7.51687 7.81395 8.29257 8.78170 9.38139 10.90081 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.005662 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.254927 B = 4943.935134 C = 5086.648926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.014 3.986 3 H 0.038 0.962 4 C -0.520 4.520 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C -0.019 4.019 13 C 0.231 3.769 14 N -0.460 5.460 15 C 0.072 3.928 16 C 0.579 3.421 17 F -0.158 7.158 18 F -0.153 7.153 19 F -0.158 7.158 20 N -0.339 5.339 21 O 0.103 5.897 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.267 0.733 26 H 0.105 0.895 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 3.809 -14.760 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.006 4.006 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.192 1.192 12 C -0.058 4.058 13 C 0.013 3.987 14 N -0.193 5.193 15 C -0.203 4.203 16 C 0.523 3.477 17 F -0.139 7.139 18 F -0.134 7.134 19 F -0.140 7.140 20 N -0.041 5.041 21 O 0.035 5.965 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.951 4.245 -15.294 15.992 hybrid contribution -0.623 0.929 0.217 1.139 sum -2.574 5.174 -15.077 16.147 Atomic orbital electron populations 1.22302 0.98763 1.01443 0.98774 1.19252 0.92234 0.97153 0.91931 0.94427 1.20783 1.33016 1.14037 0.87959 0.90074 1.24933 0.95460 0.96491 0.95759 1.69863 1.44983 1.40098 0.98070 0.86871 0.80631 0.83714 0.77172 1.20413 1.22261 1.19247 1.20826 1.03658 0.97402 0.83893 1.29872 0.80271 0.92790 0.95814 1.71920 1.29014 1.12320 1.06041 1.25423 0.92115 1.03086 0.99630 1.16107 0.74965 0.78803 0.77857 1.93268 1.50459 1.91872 1.78323 1.93290 1.87505 1.53085 1.79501 1.93272 1.63024 1.87895 1.69775 1.74656 1.19702 1.03368 1.06397 1.85369 1.38831 1.44001 1.28329 0.91959 0.93640 0.95800 0.92331 0.87723 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.49 37.16 0.32 -2.73 15 2 C 0.01 0.30 1.88 -91.77 -0.17 0.12 15 3 H 0.04 0.83 7.20 -51.93 -0.37 0.46 15 4 C -0.52 -13.06 9.14 -34.44 -0.31 -13.37 15 5 H 0.08 2.15 7.99 -52.49 -0.42 1.73 15 6 C 0.08 2.05 5.45 -17.82 -0.10 1.96 15 7 N -0.89 -25.68 13.96 55.43 0.77 -24.91 15 8 Si 0.89 20.88 24.37 -169.99 -4.14 16.73 15 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 15 10 H -0.30 -7.04 7.11 56.52 0.40 -6.64 15 11 H -0.27 -6.14 6.53 56.52 0.37 -5.77 15 12 C -0.02 -0.31 5.26 -27.88 -0.15 -0.45 15 13 C 0.23 3.74 6.92 -13.06 -0.09 3.65 15 14 N -0.46 -7.89 11.55 -9.87 -0.11 -8.00 15 15 C 0.07 1.15 7.47 -156.37 -1.17 -0.02 15 16 C 0.58 8.02 3.57 36.01 0.13 8.15 15 17 F -0.16 -2.08 17.18 2.25 0.04 -2.04 15 18 F -0.15 -2.14 17.30 2.25 0.04 -2.10 15 19 F -0.16 -2.08 17.30 2.25 0.04 -2.04 15 20 N -0.34 -5.44 11.99 30.90 0.37 -5.07 15 21 O 0.10 1.61 10.75 18.10 0.19 1.81 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 0.96 3.27 -51.93 -0.17 0.79 15 24 H 0.02 0.41 6.93 -51.93 -0.36 0.05 15 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 26 H 0.10 1.48 8.14 -51.93 -0.42 1.05 15 27 H 0.11 1.79 8.14 -51.93 -0.42 1.37 15 LS Contribution 251.21 15.07 3.79 3.79 Total: -1.00 -27.51 251.21 -2.33 -29.85 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -1.77 Total: -5.31 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.55 Total: -2.70 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 1.03 Total: -37.98 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.81 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.12 Total: -6.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.14 Total: 16.73 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.51 -2.33 -29.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235087874.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.458 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds