Wall clock time and date at job start Mon Mar 30 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47384 * 2 1 4 4 C 1.50702 * 109.47333 * 119.99915 * 2 1 3 5 5 H 1.08002 * 120.00087 * 119.99800 * 4 2 1 6 6 C 1.37876 * 120.00052 * 300.00247 * 4 2 1 7 7 N 1.31514 * 120.00239 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99677 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47100 * 90.00558 * 8 6 4 10 10 H 1.48502 * 109.46698 * 210.00344 * 8 6 4 11 11 H 1.48494 * 109.47366 * 330.00044 * 8 6 4 12 12 C 1.52999 * 109.46988 * 239.99739 * 2 1 3 13 13 C 1.50706 * 109.47138 * 65.00142 * 12 2 1 14 14 N 1.31126 * 126.55051 * 90.25130 * 13 12 2 15 15 C 1.34498 * 105.61182 * 180.12680 * 14 13 12 16 16 C 1.50706 * 126.28438 * 179.90521 * 15 14 13 17 17 F 1.39900 * 109.46715 * 194.70700 * 16 15 14 18 18 F 1.39897 * 109.47068 * 314.70611 * 16 15 14 19 19 F 1.39895 * 109.47042 * 74.70920 * 16 15 14 20 20 N 1.29940 * 107.42758 * 359.63722 * 15 14 13 21 21 O 1.21308 * 110.24948 * 0.22983 * 20 15 14 22 22 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46937 * 300.00059 * 1 2 3 24 24 H 1.08996 * 109.46770 * 59.99934 * 1 2 3 25 25 H 0.96998 * 120.00353 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47307 * 305.00275 * 12 2 1 27 27 H 1.08999 * 109.47313 * 184.99671 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9773 1.9954 3.9070 11 1 0.8491 2.1773 1.4923 12 6 2.0400 -0.7213 -1.2492 13 6 1.6413 0.0570 -2.4766 14 7 2.3369 1.0017 -3.0623 15 6 1.5917 1.4053 -4.1067 16 6 1.9538 2.4813 -5.0979 17 9 0.8155 2.8493 -5.8232 18 9 2.4522 3.5959 -4.4149 19 9 2.9298 1.9974 -5.9756 20 7 0.5047 0.6933 -4.1075 21 8 0.5136 -0.0874 -3.1790 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9033 -0.5280 4.4376 26 1 1.6054 -1.7198 -1.2951 27 1 3.1263 -0.7995 -1.2056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235087874.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:40 Heat of formation + Delta-G solvation = -101.895800 kcal Electronic energy + Delta-G solvation = -18312.458484 eV Core-core repulsion = 14658.381101 eV Total energy + Delta-G solvation = -3654.077383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.57210 -49.09018 -49.06293 -47.14442 -37.82674 -37.16522 -34.61825 -33.19006 -29.08873 -28.90850 -27.13779 -25.17530 -23.65726 -21.73787 -20.24758 -20.12469 -19.61583 -19.28950 -18.74391 -18.16002 -16.82246 -15.96880 -15.89483 -15.69569 -15.51185 -15.45942 -15.18453 -15.17120 -14.83089 -14.41249 -14.16411 -13.84001 -13.55515 -13.36515 -12.99196 -12.64004 -12.46280 -12.27943 -11.83575 -11.55946 -11.16997 -11.10009 -10.70391 -8.27583 -6.31473 -0.40068 0.53420 0.69030 1.32613 1.39987 1.45076 1.46942 1.91683 2.09252 2.33623 2.87222 3.03166 3.09158 3.32566 4.05626 4.14167 4.23901 4.46392 4.56197 4.79420 4.84722 5.04493 5.29197 5.58166 5.63545 6.27410 6.55850 6.76671 7.34437 8.88013 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.005662 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.254927 B = 4943.935134 C = 5086.648926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.012 3.988 3 H 0.025 0.975 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.937 3.063 9 H -0.266 1.266 10 H -0.303 1.303 11 H -0.257 1.257 12 C -0.010 4.010 13 C 0.235 3.765 14 N -0.476 5.476 15 C 0.066 3.934 16 C 0.586 3.414 17 F -0.152 7.152 18 F -0.153 7.153 19 F -0.153 7.153 20 N -0.341 5.341 21 O 0.111 5.889 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.266 0.734 26 H 0.130 0.870 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 4.315 -16.301 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 H 0.043 0.957 4 C -0.549 4.549 5 H 0.077 0.923 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.766 3.234 9 H -0.192 1.192 10 H -0.232 1.232 11 H -0.182 1.182 12 C -0.049 4.049 13 C 0.017 3.983 14 N -0.209 5.209 15 C -0.208 4.208 16 C 0.530 3.470 17 F -0.133 7.133 18 F -0.135 7.135 19 F -0.134 7.134 20 N -0.043 5.043 21 O 0.043 5.957 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.810 4.758 -16.869 17.751 hybrid contribution -0.315 0.725 0.626 1.008 sum -3.125 5.482 -16.243 17.426 Atomic orbital electron populations 1.22234 0.97395 1.02474 0.99018 1.19138 0.93297 0.96280 0.92056 0.95684 1.21119 1.31276 1.12947 0.89531 0.92339 1.25659 0.97035 0.99134 0.95778 1.69994 1.47418 1.42190 0.98618 0.86028 0.79684 0.80814 0.76884 1.19200 1.23163 1.18180 1.20644 1.04148 0.97995 0.82103 1.29645 0.80395 0.92515 0.95768 1.71917 1.29678 1.12696 1.06617 1.25734 0.91882 1.03436 0.99733 1.15925 0.75174 0.78321 0.77611 1.93283 1.50221 1.91754 1.78084 1.93291 1.87529 1.53026 1.79604 1.93286 1.62813 1.87832 1.69472 1.74651 1.19731 1.03401 1.06479 1.85368 1.38424 1.43806 1.28140 0.90650 0.95183 0.93631 0.92514 0.85185 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 8.49 71.98 0.61 -4.98 15 2 C 0.01 0.49 1.88 -11.54 -0.02 0.47 15 3 H 0.03 1.06 7.20 -2.39 -0.02 1.05 15 4 C -0.51 -25.38 9.14 25.60 0.23 -25.15 15 5 H 0.06 3.11 7.99 -2.91 -0.02 3.09 15 6 C 0.02 1.18 5.45 84.65 0.46 1.65 15 7 N -0.94 -55.09 13.96 21.45 0.30 -54.80 15 8 Si 0.94 42.57 24.37 68.60 1.67 44.25 15 9 H -0.27 -11.48 6.87 99.48 0.68 -10.80 15 10 H -0.30 -14.06 7.11 99.48 0.71 -13.36 15 11 H -0.26 -11.12 6.53 99.48 0.65 -10.47 15 12 C -0.01 -0.31 5.26 29.85 0.16 -0.15 15 13 C 0.24 6.99 6.92 88.38 0.61 7.60 15 14 N -0.48 -15.23 11.55 -303.19 -3.50 -18.73 15 15 C 0.07 1.97 7.47 138.47 1.03 3.00 15 16 C 0.59 14.97 3.57 71.24 0.25 15.23 15 17 F -0.15 -3.66 17.18 44.97 0.77 -2.89 15 18 F -0.15 -4.01 17.30 44.97 0.78 -3.23 15 19 F -0.15 -3.69 17.30 44.97 0.78 -2.91 15 20 N -0.34 -10.04 11.99 -60.31 -0.72 -10.77 15 21 O 0.11 3.16 10.75 74.84 0.80 3.96 15 22 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.03 1.18 3.27 -2.39 -0.01 1.17 15 24 H 0.04 1.44 6.93 -2.39 -0.02 1.43 15 25 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 26 H 0.13 3.26 8.14 -2.39 -0.02 3.24 15 27 H 0.12 3.52 8.14 -2.39 -0.02 3.50 15 Total: -1.00 -57.51 251.21 5.37 -52.14 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: 1.15 Total: -4.69 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 3.34 Total: -2.34 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.93 Total: -84.30 kcal Atomic # 8 Polarization: 3.16 SS G_CDS: 0.80 Total: 3.96 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 2.33 Total: -9.03 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.67 Total: 44.25 kcal Total: -57.51 5.37 -52.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235087874.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.751 kcal (2) G-P(sol) polarization free energy of solvation -57.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds