Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47504 * 264.99201 * 3 2 1 5 5 H 1.48501 * 109.47490 * 24.99778 * 3 2 1 6 6 H 1.48502 * 109.47067 * 144.99464 * 3 2 1 7 7 C 1.37872 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99764 * 189.58636 * 7 2 1 9 9 C 1.50697 * 120.00357 * 9.58204 * 7 2 1 10 10 H 1.08996 * 109.47503 * 305.45544 * 9 7 2 11 11 N 1.46904 * 109.47076 * 65.45396 * 9 7 2 12 12 C 1.50699 * 109.47437 * 185.45294 * 9 7 2 13 13 C 1.34401 * 126.50572 * 285.03076 * 12 9 7 14 14 Cl 1.73603 * 125.04936 * 0.02873 * 13 12 9 15 15 N 1.36839 * 109.90500 * 179.97438 * 13 12 9 16 16 H 0.97000 * 125.06585 * 179.97438 * 15 13 12 17 17 C 1.37767 * 109.87045 * 359.97438 * 15 13 12 18 18 C 1.39093 * 133.48782 * 180.02562 * 17 15 13 19 19 C 1.37775 * 119.78255 * 179.97438 * 18 17 15 20 20 C 1.38819 * 120.66633 * 359.97438 * 19 18 17 21 21 C 1.36636 * 120.52258 * 0.02562 * 20 19 18 22 22 C 1.39632 * 119.76643 * 359.65162 * 21 20 19 23 23 H 0.97001 * 119.99900 * 359.97438 * 1 2 3 24 24 H 1.00902 * 110.99844 * 292.74032 * 11 9 7 25 25 H 1.00903 * 110.99488 * 56.69135 * 11 9 7 26 26 H 1.08000 * 120.10863 * 359.97438 * 18 17 15 27 27 H 1.08005 * 119.66775 * 179.97438 * 19 18 17 28 28 H 1.07997 * 119.73575 * 180.02562 * 20 19 18 29 29 H 1.08007 * 120.11860 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9854 -1.3947 5 1 1.3978 2.6809 0.5916 6 1 3.4898 1.4730 0.8032 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1552 9 6 1.2668 -2.4899 -0.2183 10 1 0.4556 -2.5723 0.5050 11 7 0.7139 -2.5159 -1.5791 12 6 2.2177 -3.6454 -0.0404 13 6 3.1652 -4.0419 -0.9073 14 17 3.4944 -3.2902 -2.4371 15 7 3.8328 -5.1253 -0.4043 16 1 4.5595 -5.5883 -0.8499 17 6 3.3190 -5.4607 0.8292 18 6 3.6218 -6.4543 1.7543 19 6 2.9096 -6.5338 2.9310 20 6 1.8912 -5.6310 3.2045 21 6 1.5771 -4.6472 2.3099 22 6 2.2906 -4.5441 1.1141 23 1 -0.4850 0.8401 0.0004 24 1 -0.0132 -1.8247 -1.6872 25 1 1.4406 -2.3869 -2.2672 26 1 4.4127 -7.1611 1.5508 27 1 3.1460 -7.3063 3.6478 28 1 1.3428 -5.7069 4.1318 29 1 0.7832 -3.9485 2.5292 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238584555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = 45.733213 kcal Electronic energy + Delta-G solvation = -15751.291705 eV Core-core repulsion = 13086.181901 eV Total energy + Delta-G solvation = -2665.109804 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76339 -36.82867 -35.78140 -34.70389 -31.81430 -30.61702 -28.96254 -27.86923 -25.74641 -22.55239 -22.30634 -21.34533 -18.66683 -17.47867 -16.53405 -16.05882 -15.31265 -14.60344 -14.28162 -13.85173 -13.72758 -13.43273 -12.95564 -12.73823 -11.99232 -11.88165 -11.38312 -11.28799 -11.02863 -10.91932 -10.74765 -10.50493 -10.19316 -10.03442 -9.56815 -9.06416 -8.48392 -7.75354 -7.26136 -6.96670 -6.02796 -4.14228 1.51389 2.00928 2.24570 3.19317 3.27574 3.34299 3.39155 3.78772 4.32282 4.42313 5.10239 5.20084 5.34827 5.44184 5.77694 5.80126 5.87349 6.20272 6.39877 6.45806 6.79355 6.85156 6.97728 7.09609 7.23322 7.52630 7.67474 7.82801 7.89696 8.19765 8.78426 8.92998 9.13883 9.52842 10.96800 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.008485 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.855315 B = 3299.002822 C = 4004.215112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.268 3.732 10 H 0.055 0.945 11 N -0.853 5.853 12 C -0.062 4.062 13 C 0.092 3.908 14 Cl -0.019 7.019 15 N -0.598 5.598 16 H 0.409 0.591 17 C 0.107 3.893 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.161 4.161 21 C -0.048 4.048 22 C -0.098 4.098 23 H 0.264 0.736 24 H 0.343 0.657 25 H 0.318 0.682 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 -10.201 1.058 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.073 0.927 9 C 0.158 3.842 10 H 0.073 0.927 11 N -0.383 5.383 12 C -0.070 4.070 13 C -0.038 4.038 14 Cl 0.009 6.991 15 N -0.206 5.206 16 H 0.246 0.754 17 C -0.001 4.001 18 C -0.161 4.161 19 C -0.120 4.120 20 C -0.181 4.181 21 C -0.067 4.067 22 C -0.104 4.104 23 H 0.073 0.927 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.729 -10.774 0.982 12.242 hybrid contribution 1.403 1.821 -0.464 2.346 sum 7.132 -8.953 0.518 11.459 Atomic orbital electron populations 1.69912 1.05758 1.27002 1.50110 1.24965 0.94811 0.99049 0.94559 0.86651 0.79983 0.83363 0.78293 1.20583 1.21241 1.19948 1.21734 0.94606 0.91131 1.50124 0.92738 1.17415 0.90923 0.86749 0.89147 0.92666 1.59536 1.16544 1.56773 1.05484 1.20875 0.97641 0.97992 0.90521 1.20257 0.99390 0.93385 0.90797 1.98329 1.94593 1.79305 1.26829 1.41492 1.33974 1.28306 1.16799 0.75443 1.18104 0.97087 0.98218 0.86649 1.19863 1.03060 0.98920 0.94289 1.20690 0.96190 0.99146 0.95940 1.20543 1.00086 0.97327 1.00119 1.20400 0.97884 0.96880 0.91525 1.19072 0.98290 0.96902 0.96101 0.92668 0.84365 0.86917 0.86801 0.86296 0.86378 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 12.33 55.43 0.68 -23.96 15 2 C 0.07 1.86 5.32 -17.82 -0.09 1.77 15 3 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.54 -14.48 8.63 -34.44 -0.30 -14.77 15 8 H 0.05 1.51 7.76 -52.48 -0.41 1.11 15 9 C 0.27 6.76 2.95 -70.02 -0.21 6.55 15 10 H 0.06 1.53 8.09 -51.93 -0.42 1.11 15 11 N -0.85 -20.56 9.10 -6.65 -0.06 -20.62 15 12 C -0.06 -1.40 5.22 -102.66 -0.54 -1.94 15 13 C 0.09 1.83 7.60 -16.67 -0.13 1.70 15 14 Cl -0.02 -0.35 26.37 -51.86 -1.37 -1.71 15 15 N -0.60 -10.00 6.07 -7.82 -0.05 -10.05 15 16 H 0.41 5.32 8.96 -40.82 -0.37 4.96 15 17 C 0.11 1.88 7.28 -83.96 -0.61 1.27 15 18 C -0.14 -2.03 10.08 -39.43 -0.40 -2.43 15 19 C -0.10 -1.37 10.01 -39.54 -0.40 -1.77 15 20 C -0.16 -2.42 9.97 -39.95 -0.40 -2.81 15 21 C -0.05 -0.88 10.05 -39.64 -0.40 -1.28 15 22 C -0.10 -1.99 6.35 -105.13 -0.67 -2.66 15 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.34 8.70 7.98 -39.29 -0.31 8.38 15 25 H 0.32 7.31 5.91 -39.29 -0.23 7.08 15 26 H 0.11 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.12 1.23 8.06 -52.48 -0.42 0.81 15 28 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 29 H 0.13 2.31 8.06 -52.48 -0.42 1.88 15 LS Contribution 267.46 15.07 4.03 4.03 Total: -1.00 -28.89 267.46 -8.48 -37.37 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -2.57 Total: 15.20 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.13 Total: -16.37 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.58 Total: -54.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.37 Total: -1.71 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.89 -8.48 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.100 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds