Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.34241 * 125.03663 * 114.99768 * 12 9 7 14 14 C 1.46489 * 107.00244 * 179.97438 * 13 12 9 15 15 C 1.39644 * 134.01433 * 179.97438 * 14 13 12 16 16 C 1.36717 * 119.75251 * 180.02562 * 15 14 13 17 17 Cl 1.73596 * 119.74860 * 179.97438 * 16 15 14 18 18 C 1.38931 * 120.49996 * 359.95645 * 16 15 14 19 19 C 1.37736 * 120.65642 * 0.04832 * 18 16 15 20 20 C 1.39126 * 119.79697 * 359.97050 * 19 18 16 21 21 N 1.36825 * 125.02995 * 294.69769 * 12 9 7 22 22 H 0.96997 * 125.06847 * 359.97438 * 21 12 9 23 23 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 24 24 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 25 25 H 1.00899 * 110.99979 * 183.95580 * 11 9 7 26 26 H 1.07998 * 126.49686 * 359.96400 * 13 12 9 27 27 H 1.07998 * 120.12300 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.67015 * 180.02562 * 18 16 15 29 29 H 1.07999 * 120.09798 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.3818 -4.5345 0.9816 14 6 3.4305 -5.4682 0.5642 15 6 4.0242 -6.5868 1.1528 16 6 5.0071 -7.2633 0.4854 17 17 5.7455 -8.6534 1.2175 18 6 5.4192 -6.8468 -0.7743 19 6 4.8465 -5.7461 -1.3723 20 6 3.8449 -5.0427 -0.7108 21 7 3.0925 -3.9352 -1.0339 22 1 3.1643 -3.4350 -1.8619 23 1 -0.4849 0.8401 0.0041 24 1 0.9559 -2.5207 -2.0431 25 1 -0.1625 -3.4108 -1.1930 26 1 1.8343 -4.5575 1.9122 27 1 3.7081 -6.9162 2.1315 28 1 6.1965 -7.3914 -1.2897 29 1 5.1735 -5.4306 -2.3521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601591.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = 42.713830 kcal Electronic energy + Delta-G solvation = -15259.268413 eV Core-core repulsion = 12594.027679 eV Total energy + Delta-G solvation = -2665.240734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.90693 -37.38030 -35.91094 -34.13291 -31.73343 -31.46413 -28.82291 -28.37704 -26.09003 -23.16401 -21.84519 -20.94622 -19.61468 -17.45444 -16.73857 -16.01699 -15.32609 -14.56982 -14.26173 -14.17379 -14.07741 -13.68290 -12.79707 -12.64228 -12.44886 -12.38061 -12.06913 -11.43317 -11.15360 -10.93794 -10.88384 -10.60134 -10.55901 -10.04485 -9.53727 -9.29213 -8.57972 -7.79530 -7.45559 -7.21170 -6.04004 -4.21564 1.31280 1.67646 2.34375 3.22188 3.26926 3.31468 3.35712 3.58906 4.02144 4.35966 4.88124 5.12003 5.21191 5.43700 5.51675 5.57160 5.95955 6.03147 6.09258 6.14809 6.31609 6.45494 6.61503 6.82856 7.01693 7.29272 7.59705 7.72218 7.89096 8.04652 8.38669 8.75148 8.92674 9.48922 10.99778 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.043308 B = 0.004757 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.383672 B = 5884.579231 C = 5987.964230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.087 3.913 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.272 3.728 10 H 0.066 0.934 11 N -0.807 5.807 12 C 0.113 3.887 13 C -0.235 4.235 14 C -0.089 4.089 15 C -0.068 4.068 16 C -0.063 4.063 17 Cl -0.091 7.091 18 C -0.109 4.109 19 C -0.114 4.114 20 C 0.088 3.912 21 N -0.581 5.581 22 H 0.415 0.585 23 H 0.259 0.741 24 H 0.315 0.685 25 H 0.303 0.697 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -11.751 -1.611 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.121 4.121 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.162 3.838 10 H 0.084 0.916 11 N -0.332 5.332 12 C 0.001 3.999 13 C -0.259 4.259 14 C -0.094 4.094 15 C -0.087 4.087 16 C -0.091 4.091 17 Cl -0.062 7.062 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.020 4.020 21 N -0.182 5.182 22 H 0.251 0.749 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.160 0.840 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.854 -10.967 -1.375 13.006 hybrid contribution 1.245 0.154 -0.516 1.356 sum 8.099 -10.813 -1.891 13.641 Atomic orbital electron populations 1.70078 1.05705 1.26254 1.45537 1.24930 0.94682 0.98698 0.93819 0.86751 0.79710 0.83327 0.78628 1.20369 1.21171 1.20205 1.20745 0.92231 0.89424 1.55845 0.92778 1.18160 0.86420 0.87302 0.91922 0.91598 1.59176 1.27688 1.42369 1.03932 1.22867 0.92825 0.97632 0.86574 1.21425 1.04331 0.98630 1.01524 1.19161 0.99247 0.96745 0.94290 1.20036 0.95026 0.94018 0.99597 1.20129 1.00320 0.92963 0.95702 1.98323 1.82431 1.42307 1.83167 1.20456 1.01207 0.97292 0.93973 1.19886 0.97139 0.96308 1.00125 1.18359 0.96522 0.91149 0.96013 1.41887 1.32619 1.24965 1.18774 0.74850 0.93071 0.87382 0.88601 0.83968 0.85494 0.85397 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.19 12.76 55.43 0.71 -22.48 15 2 C 0.09 2.29 5.39 -17.82 -0.10 2.19 15 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.54 -13.92 8.71 -34.44 -0.30 -14.22 15 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 9 C 0.27 6.20 3.08 -70.02 -0.22 5.99 15 10 H 0.07 1.65 8.09 -51.93 -0.42 1.23 15 11 N -0.81 -17.24 8.52 -6.65 -0.06 -17.30 15 12 C 0.11 2.23 5.81 -81.77 -0.48 1.76 15 13 C -0.23 -4.44 10.91 -37.67 -0.41 -4.85 15 14 C -0.09 -1.56 6.37 -105.14 -0.67 -2.23 15 15 C -0.07 -1.05 9.81 -39.61 -0.39 -1.43 15 16 C -0.06 -0.91 6.28 -39.88 -0.25 -1.16 15 17 Cl -0.09 -1.14 28.93 -51.86 -1.50 -2.64 15 18 C -0.11 -1.46 9.79 -39.51 -0.39 -1.85 15 19 C -0.11 -1.60 10.07 -39.44 -0.40 -2.00 15 20 C 0.09 1.48 7.28 -83.97 -0.61 0.87 15 21 N -0.58 -10.10 6.07 -6.95 -0.04 -10.14 15 22 H 0.41 6.50 8.95 -40.82 -0.37 6.13 15 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.31 6.29 8.97 -39.30 -0.35 5.94 15 25 H 0.30 5.84 9.06 -39.29 -0.36 5.48 15 26 H 0.14 2.51 8.06 -52.49 -0.42 2.08 15 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 15 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -27.61 274.00 -8.71 -36.32 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -2.73 Total: 13.65 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.20 Total: -16.93 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.61 Total: -49.92 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.61 -8.71 -36.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601591.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.031 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds