Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.34241 * 125.03663 * 114.99768 * 12 9 7 14 14 C 1.46489 * 107.00244 * 179.97438 * 13 12 9 15 15 C 1.39644 * 134.01433 * 179.97438 * 14 13 12 16 16 C 1.36717 * 119.75251 * 180.02562 * 15 14 13 17 17 Cl 1.73596 * 119.74860 * 179.97438 * 16 15 14 18 18 C 1.38931 * 120.49996 * 359.95645 * 16 15 14 19 19 C 1.37736 * 120.65642 * 0.04832 * 18 16 15 20 20 C 1.39126 * 119.79697 * 359.97050 * 19 18 16 21 21 N 1.36825 * 125.02995 * 294.69769 * 12 9 7 22 22 H 0.96997 * 125.06847 * 359.97438 * 21 12 9 23 23 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 24 24 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 25 25 H 1.00899 * 110.99979 * 183.95580 * 11 9 7 26 26 H 1.07998 * 126.49686 * 359.96400 * 13 12 9 27 27 H 1.07998 * 120.12300 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.67015 * 180.02562 * 18 16 15 29 29 H 1.07999 * 120.09798 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.3818 -4.5345 0.9816 14 6 3.4305 -5.4682 0.5642 15 6 4.0242 -6.5868 1.1528 16 6 5.0071 -7.2633 0.4854 17 17 5.7455 -8.6534 1.2175 18 6 5.4192 -6.8468 -0.7743 19 6 4.8465 -5.7461 -1.3723 20 6 3.8449 -5.0427 -0.7108 21 7 3.0925 -3.9352 -1.0339 22 1 3.1643 -3.4350 -1.8619 23 1 -0.4849 0.8401 0.0041 24 1 0.9559 -2.5207 -2.0431 25 1 -0.1625 -3.4108 -1.1930 26 1 1.8343 -4.5575 1.9122 27 1 3.7081 -6.9162 2.1315 28 1 6.1965 -7.3914 -1.2897 29 1 5.1735 -5.4306 -2.3521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238601591.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = 25.574545 kcal Electronic energy + Delta-G solvation = -15260.011628 eV Core-core repulsion = 12594.027679 eV Total energy + Delta-G solvation = -2665.983949 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22118 -38.59565 -37.10058 -35.81387 -33.44037 -32.90472 -30.07345 -29.77747 -27.93779 -24.72334 -23.12640 -22.29812 -21.09198 -18.73935 -18.59631 -17.33444 -16.82252 -16.21470 -15.99075 -15.51811 -15.34649 -14.87326 -14.42135 -14.12516 -13.81693 -13.68556 -13.46669 -13.13435 -12.74558 -12.63938 -12.25967 -12.04111 -11.72771 -11.67205 -11.26419 -10.69513 -10.59013 -9.21147 -8.92017 -8.62491 -8.03273 -6.26352 0.11035 0.48685 1.24489 1.42952 1.44811 1.51341 1.82107 2.26173 2.44997 2.80921 3.21803 3.72455 3.95681 4.18160 4.29936 4.35303 4.44996 4.64414 4.71555 4.95830 5.03218 5.14667 5.32370 5.36096 5.68609 5.73168 5.87954 6.03573 6.18017 6.54564 6.69093 6.99816 7.14575 7.47249 8.99331 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.043308 B = 0.004757 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.383672 B = 5884.579231 C = 5987.964230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.041 3.959 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.281 3.719 10 H 0.033 0.967 11 N -0.815 5.815 12 C 0.093 3.907 13 C -0.243 4.243 14 C -0.114 4.114 15 C -0.075 4.075 16 C -0.065 4.065 17 Cl -0.073 7.073 18 C -0.099 4.099 19 C -0.112 4.112 20 C 0.078 3.922 21 N -0.576 5.576 22 H 0.420 0.580 23 H 0.258 0.742 24 H 0.323 0.677 25 H 0.315 0.685 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.160 0.840 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.334 -12.858 -2.472 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.164 4.164 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.065 0.935 9 C 0.170 3.830 10 H 0.051 0.949 11 N -0.341 5.341 12 C -0.019 4.019 13 C -0.268 4.268 14 C -0.119 4.119 15 C -0.094 4.094 16 C -0.093 4.093 17 Cl -0.044 7.044 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.030 4.030 21 N -0.179 5.179 22 H 0.258 0.742 23 H 0.067 0.933 24 H 0.135 0.865 25 H 0.127 0.873 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.177 0.823 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.839 -12.088 -2.247 15.142 hybrid contribution 0.723 0.319 -0.216 0.819 sum 9.562 -11.768 -2.463 15.362 Atomic orbital electron populations 1.70194 1.06937 1.26756 1.47005 1.25609 0.95382 1.01653 0.93721 0.85811 0.78480 0.79770 0.78576 1.19723 1.21041 1.20231 1.21018 0.92060 0.90864 1.55031 0.93488 1.17693 0.86577 0.87631 0.91110 0.94892 1.58974 1.27998 1.43338 1.03818 1.22241 0.93928 0.97614 0.88140 1.21591 1.04784 0.99037 1.01352 1.19265 0.99715 0.97709 0.95229 1.20178 0.95390 0.93645 1.00221 1.20308 0.99744 0.93205 0.96056 1.98334 1.81949 1.41168 1.82982 1.20873 1.00936 0.96629 0.93386 1.20256 0.95932 0.95869 1.01201 1.18700 0.97115 0.91010 0.96146 1.41725 1.32369 1.25370 1.18419 0.74170 0.93289 0.86482 0.87307 0.83955 0.84582 0.82259 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.93 12.76 21.45 0.27 -48.65 15 2 C 0.04 2.19 5.39 84.66 0.46 2.65 15 3 Si 0.95 42.12 29.54 68.60 2.03 44.15 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 7 C -0.55 -28.64 8.71 25.60 0.22 -28.41 15 8 H 0.05 2.46 7.74 -2.91 -0.02 2.43 15 9 C 0.28 13.15 3.08 43.42 0.13 13.29 15 10 H 0.03 1.75 8.09 -2.38 -0.02 1.73 15 11 N -0.81 -35.42 8.52 -174.95 -1.49 -36.91 15 12 C 0.09 3.74 5.81 40.87 0.24 3.97 15 13 C -0.24 -9.35 10.91 23.51 0.26 -9.10 15 14 C -0.11 -3.92 6.37 -20.20 -0.13 -4.05 15 15 C -0.08 -2.21 9.81 22.25 0.22 -2.00 15 16 C -0.07 -1.69 6.28 22.08 0.14 -1.55 15 17 Cl -0.07 -1.63 28.93 -2.72 -0.08 -1.70 15 18 C -0.10 -2.27 9.79 22.32 0.22 -2.05 15 19 C -0.11 -2.79 10.07 22.36 0.23 -2.57 15 20 C 0.08 2.52 7.28 39.02 0.28 2.80 15 21 N -0.58 -19.76 6.07 -175.89 -1.07 -20.83 15 22 H 0.42 12.89 8.95 -92.71 -0.83 12.06 15 23 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 24 H 0.32 12.98 8.97 -89.70 -0.80 12.18 15 25 H 0.32 12.34 9.06 -89.70 -0.81 11.53 15 26 H 0.14 5.24 8.06 -2.91 -0.02 5.21 15 27 H 0.14 3.63 8.06 -2.91 -0.02 3.60 15 28 H 0.16 2.68 8.06 -2.91 -0.02 2.65 15 29 H 0.15 2.88 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -58.62 274.00 0.69 -57.92 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -1.23 Total: 33.03 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 2.26 Total: -27.01 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -2.28 Total: -106.39 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.70 kcal Total: -58.62 0.69 -57.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601591.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.497 kcal (2) G-P(sol) polarization free energy of solvation -58.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds