Wall clock time and date at job start Mon Mar 30 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.34241 * 125.03663 * 114.99768 * 12 9 7 14 14 C 1.46495 * 106.99780 * 179.97438 * 13 12 9 15 15 C 1.39664 * 134.01812 * 180.02562 * 14 13 12 16 16 C 1.36616 * 119.78574 * 179.97438 * 15 14 13 17 17 C 1.38825 * 120.53664 * 0.02562 * 16 15 14 18 18 C 1.37848 * 120.65343 * 359.97438 * 17 16 15 19 19 Cl 1.73606 * 120.12328 * 180.02562 * 18 17 16 20 20 C 1.39228 * 119.75655 * 0.04228 * 18 17 16 21 21 N 1.36813 * 125.03241 * 294.69521 * 12 9 7 22 22 H 0.97000 * 125.06791 * 0.02562 * 21 12 9 23 23 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 24 24 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 25 25 H 1.00899 * 110.99979 * 183.95580 * 11 9 7 26 26 H 1.07993 * 126.50370 * 0.02562 * 13 12 9 27 27 H 1.08000 * 120.10826 * 359.95813 * 15 14 13 28 28 H 1.07997 * 119.72871 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.67180 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.3818 -4.5345 0.9816 14 6 3.4306 -5.4682 0.5641 15 6 4.0238 -6.5874 1.1522 16 6 5.0055 -7.2643 0.4855 17 6 5.4193 -6.8484 -0.7727 18 6 4.8476 -5.7464 -1.3720 19 17 5.3752 -5.2388 -2.9461 20 6 3.8457 -5.0418 -0.7100 21 7 3.0925 -3.9352 -1.0338 22 1 3.1647 -3.4346 -1.8615 23 1 -0.4849 0.8401 0.0041 24 1 0.9559 -2.5207 -2.0431 25 1 -0.1625 -3.4108 -1.1930 26 1 1.8338 -4.5582 1.9118 27 1 3.7077 -6.9167 2.1310 28 1 5.4639 -8.1294 0.9413 29 1 6.1969 -7.3936 -1.2872 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:03 Heat of formation + Delta-G solvation = 42.704299 kcal Electronic energy + Delta-G solvation = -15448.238011 eV Core-core repulsion = 12782.996863 eV Total energy + Delta-G solvation = -2665.241147 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89900 -37.20926 -36.16456 -34.20156 -31.57793 -31.29251 -28.90883 -28.38692 -26.07262 -23.07083 -21.92058 -20.89389 -19.57169 -17.54567 -16.69689 -15.88785 -15.23526 -14.58598 -14.28470 -14.24225 -14.01442 -13.94210 -12.70548 -12.62506 -12.43646 -12.10360 -11.77909 -11.43072 -11.11497 -11.04719 -10.92855 -10.79268 -10.66801 -10.05442 -9.40215 -9.12330 -8.56462 -7.87108 -7.42173 -7.17987 -6.01972 -4.18957 1.24146 1.80423 2.29016 3.21615 3.26406 3.34671 3.39321 3.57206 4.05128 4.38382 5.01682 5.08354 5.23598 5.38660 5.48052 5.57272 6.01737 6.03034 6.10285 6.19647 6.32510 6.50915 6.73105 6.89568 7.01107 7.32070 7.60429 7.75406 7.89958 8.05398 8.41187 8.77771 8.95559 9.51495 11.01886 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027238 B = 0.006311 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.729665 B = 4435.560692 C = 4863.627933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.087 3.913 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.272 3.728 10 H 0.067 0.933 11 N -0.807 5.807 12 C 0.113 3.887 13 C -0.236 4.236 14 C -0.087 4.087 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.107 4.107 18 C -0.041 4.041 19 Cl -0.087 7.087 20 C 0.092 3.908 21 N -0.576 5.576 22 H 0.415 0.585 23 H 0.258 0.742 24 H 0.315 0.685 25 H 0.303 0.697 26 H 0.144 0.856 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -11.902 -1.411 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.161 3.839 10 H 0.085 0.915 11 N -0.332 5.332 12 C 0.001 3.999 13 C -0.260 4.260 14 C -0.093 4.093 15 C -0.091 4.091 16 C -0.166 4.166 17 C -0.126 4.126 18 C -0.071 4.071 19 Cl -0.058 7.058 20 C -0.017 4.017 21 N -0.177 5.177 22 H 0.253 0.747 23 H 0.068 0.932 24 H 0.127 0.873 25 H 0.114 0.886 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.854 -10.948 -1.387 12.991 hybrid contribution 1.226 0.339 -0.770 1.486 sum 8.079 -10.609 -2.157 13.509 Atomic orbital electron populations 1.70102 1.05690 1.25982 1.45817 1.24927 0.94673 0.98696 0.93831 0.86643 0.80226 0.84013 0.77663 1.19875 1.20964 1.20867 1.20823 0.92313 0.89382 1.55501 0.92676 1.18179 0.86401 0.87332 0.91940 0.91542 1.59178 1.27690 1.42332 1.03956 1.22885 0.92779 0.97707 0.86522 1.21434 1.04392 0.98675 1.01508 1.19280 0.99202 0.97396 0.93418 1.20325 0.95627 0.93768 0.99402 1.20430 0.99717 1.01459 0.94984 1.20571 1.00669 0.95429 0.95972 1.19863 0.99915 0.99193 0.88089 1.98338 1.90005 1.90991 1.26504 1.17913 0.96169 0.91753 0.95874 1.41858 1.32280 1.24746 1.18853 0.74732 0.93226 0.87348 0.88615 0.83854 0.85919 0.85763 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.39 12.76 55.43 0.71 -22.68 15 2 C 0.09 2.31 5.39 -17.82 -0.10 2.21 15 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.54 -14.08 8.71 -34.44 -0.30 -14.38 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.27 6.29 3.08 -70.02 -0.22 6.08 15 10 H 0.07 1.68 8.09 -51.93 -0.42 1.26 15 11 N -0.81 -17.64 8.52 -6.65 -0.06 -17.70 15 12 C 0.11 2.29 5.81 -81.78 -0.48 1.82 15 13 C -0.24 -4.47 10.92 -37.67 -0.41 -4.88 15 14 C -0.09 -1.53 6.37 -105.14 -0.67 -2.20 15 15 C -0.07 -1.05 10.05 -39.64 -0.40 -1.45 15 16 C -0.15 -1.87 9.97 -39.95 -0.40 -2.27 15 17 C -0.11 -1.44 9.80 -39.51 -0.39 -1.83 15 18 C -0.04 -0.65 6.34 -39.36 -0.25 -0.90 15 19 Cl -0.09 -1.24 28.97 -51.86 -1.50 -2.75 15 20 C 0.09 1.64 7.07 -83.95 -0.59 1.04 15 21 N -0.58 -10.68 6.07 -6.94 -0.04 -10.72 15 22 H 0.42 7.33 8.95 -40.82 -0.37 6.97 15 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 24 H 0.32 6.54 8.97 -39.30 -0.35 6.19 15 25 H 0.30 5.96 9.06 -39.29 -0.36 5.61 15 26 H 0.14 2.50 8.06 -52.49 -0.42 2.08 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.12 1.20 8.06 -52.49 -0.42 0.77 15 29 H 0.13 1.41 8.06 -52.48 -0.42 0.98 15 LS Contribution 274.04 15.07 4.13 4.13 Total: -1.00 -27.98 274.04 -8.71 -36.69 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -2.73 Total: 14.11 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.19 Total: -16.75 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.61 Total: -51.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.98 -8.71 -36.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.391 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds