Wall clock time and date at job start Mon Mar 30 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.34241 * 125.03663 * 114.99768 * 12 9 7 14 14 C 1.46495 * 106.99780 * 179.97438 * 13 12 9 15 15 C 1.39664 * 134.01812 * 180.02562 * 14 13 12 16 16 C 1.36616 * 119.78574 * 179.97438 * 15 14 13 17 17 C 1.38825 * 120.53664 * 0.02562 * 16 15 14 18 18 C 1.37848 * 120.65343 * 359.97438 * 17 16 15 19 19 Cl 1.73606 * 120.12328 * 180.02562 * 18 17 16 20 20 C 1.39228 * 119.75655 * 0.04228 * 18 17 16 21 21 N 1.36813 * 125.03241 * 294.69521 * 12 9 7 22 22 H 0.97000 * 125.06791 * 0.02562 * 21 12 9 23 23 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 24 24 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 25 25 H 1.00899 * 110.99979 * 183.95580 * 11 9 7 26 26 H 1.07993 * 126.50370 * 0.02562 * 13 12 9 27 27 H 1.08000 * 120.10826 * 359.95813 * 15 14 13 28 28 H 1.07997 * 119.72871 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.67180 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.3818 -4.5345 0.9816 14 6 3.4306 -5.4682 0.5641 15 6 4.0238 -6.5874 1.1522 16 6 5.0055 -7.2643 0.4855 17 6 5.4193 -6.8484 -0.7727 18 6 4.8476 -5.7464 -1.3720 19 17 5.3752 -5.2388 -2.9461 20 6 3.8457 -5.0418 -0.7100 21 7 3.0925 -3.9352 -1.0338 22 1 3.1647 -3.4346 -1.8615 23 1 -0.4849 0.8401 0.0041 24 1 0.9559 -2.5207 -2.0431 25 1 -0.1625 -3.4108 -1.1930 26 1 1.8338 -4.5582 1.9118 27 1 3.7077 -6.9167 2.1310 28 1 5.4639 -8.1294 0.9413 29 1 6.1969 -7.3936 -1.2872 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238601983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:03 Heat of formation + Delta-G solvation = 25.003447 kcal Electronic energy + Delta-G solvation = -15449.005577 eV Core-core repulsion = 12782.996863 eV Total energy + Delta-G solvation = -2666.008714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22282 -38.46040 -37.32807 -35.94888 -33.46160 -32.60583 -30.14824 -29.78586 -27.95367 -24.67047 -23.16070 -22.24916 -21.07357 -18.84286 -18.60443 -17.22476 -16.72979 -16.20602 -15.96439 -15.63253 -15.31889 -15.15427 -14.45560 -14.14723 -13.79726 -13.41599 -13.37683 -12.93784 -12.78249 -12.56600 -12.22260 -12.15357 -11.96113 -11.90595 -11.28837 -10.60899 -10.43796 -9.26689 -8.98098 -8.57472 -8.04354 -6.26935 0.04849 0.63802 1.14496 1.39595 1.42900 1.52069 1.79045 2.20957 2.43894 2.86892 3.20615 3.80141 4.03391 4.07825 4.30929 4.34478 4.45029 4.64568 4.86494 4.94735 5.01659 5.19802 5.35597 5.58359 5.68347 5.79091 5.95714 6.02465 6.18912 6.52140 6.61359 6.97170 7.13126 7.46404 8.98539 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027238 B = 0.006311 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.729665 B = 4435.560692 C = 4863.627933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.043 0.957 9 C 0.280 3.720 10 H 0.037 0.963 11 N -0.815 5.815 12 C 0.087 3.913 13 C -0.238 4.238 14 C -0.112 4.112 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.061 4.061 19 Cl -0.081 7.081 20 C 0.076 3.924 21 N -0.577 5.577 22 H 0.414 0.586 23 H 0.258 0.742 24 H 0.321 0.679 25 H 0.315 0.685 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.167 0.833 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 -13.624 -1.296 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.163 4.163 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.061 0.939 9 C 0.170 3.830 10 H 0.055 0.945 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.263 4.263 14 C -0.118 4.118 15 C -0.093 4.093 16 C -0.154 4.154 17 C -0.113 4.113 18 C -0.090 4.090 19 Cl -0.052 7.052 20 C -0.033 4.033 21 N -0.179 5.179 22 H 0.251 0.749 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.184 0.816 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.720 -12.683 -1.275 15.444 hybrid contribution 0.747 0.702 -0.795 1.298 sum 9.467 -11.981 -2.070 15.410 Atomic orbital electron populations 1.70205 1.06844 1.26593 1.47140 1.25588 0.95391 1.01571 0.93726 0.85704 0.78827 0.80476 0.77639 1.19983 1.20682 1.20494 1.21048 0.91912 0.90962 1.54841 0.93854 1.17718 0.86571 0.87615 0.91137 0.94472 1.58997 1.27998 1.43286 1.03803 1.22291 0.94021 0.97999 0.88158 1.21641 1.04647 0.98767 1.01214 1.19492 0.99647 0.98713 0.93903 1.20707 0.95495 0.92575 1.00492 1.20930 0.98334 1.01823 0.94274 1.21081 1.00089 0.94062 0.96096 1.20104 1.00121 1.00009 0.88765 1.98337 1.89817 1.91093 1.25983 1.18245 0.96844 0.91681 0.96535 1.41716 1.32449 1.25334 1.18412 0.74862 0.93285 0.86760 0.87307 0.83314 0.83499 0.81586 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.38 12.76 21.45 0.27 -49.11 15 2 C 0.04 2.28 5.39 84.66 0.46 2.73 15 3 Si 0.95 43.08 29.54 68.60 2.03 45.10 15 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 7 C -0.55 -29.27 8.71 25.60 0.22 -29.05 15 8 H 0.04 2.36 7.74 -2.91 -0.02 2.34 15 9 C 0.28 13.45 3.08 43.42 0.13 13.58 15 10 H 0.04 1.98 8.09 -2.38 -0.02 1.96 15 11 N -0.81 -36.66 8.52 -174.95 -1.49 -38.15 15 12 C 0.09 3.62 5.81 40.87 0.24 3.86 15 13 C -0.24 -9.12 10.92 23.51 0.26 -8.86 15 14 C -0.11 -3.82 6.37 -20.20 -0.13 -3.95 15 15 C -0.07 -1.92 10.05 22.23 0.22 -1.69 15 16 C -0.13 -2.82 9.97 22.03 0.22 -2.60 15 17 C -0.09 -2.16 9.80 22.32 0.22 -1.95 15 18 C -0.06 -1.78 6.34 22.42 0.14 -1.64 15 19 Cl -0.08 -2.19 28.97 -2.72 -0.08 -2.27 15 20 C 0.08 2.63 7.07 39.04 0.28 2.90 15 21 N -0.58 -21.71 6.07 -175.86 -1.07 -22.78 15 22 H 0.41 15.01 8.95 -92.71 -0.83 14.18 15 23 H 0.26 13.94 8.31 -92.71 -0.77 13.17 15 24 H 0.32 13.67 8.97 -89.70 -0.80 12.87 15 25 H 0.32 12.75 9.06 -89.70 -0.81 11.94 15 26 H 0.15 5.29 8.06 -2.91 -0.02 5.27 15 27 H 0.15 3.01 8.06 -2.91 -0.02 2.98 15 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 15 29 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 Total: -1.00 -60.40 274.04 0.69 -59.71 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -1.23 Total: 34.15 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 2.26 Total: -26.65 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -2.28 Total: -110.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -60.40 0.69 -59.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.711 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds