Wall clock time and date at job start Mon Mar 30 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48493 * 109.47020 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47513 * 119.99621 * 3 2 1 6 6 H 1.48502 * 109.47021 * 239.99977 * 3 2 1 7 7 C 1.37881 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00165 * 186.11905 * 7 2 1 9 9 C 1.50701 * 120.00235 * 6.11963 * 7 2 1 10 10 H 1.09002 * 109.46919 * 35.13672 * 9 7 2 11 11 N 1.46897 * 109.46953 * 275.14486 * 9 7 2 12 12 C 1.50701 * 109.47405 * 155.13829 * 9 7 2 13 13 C 1.34403 * 126.49956 * 74.69434 * 12 9 7 14 14 Cl 1.73599 * 125.04992 * 359.97438 * 13 12 9 15 15 N 1.36846 * 109.89820 * 179.83489 * 13 12 9 16 16 H 0.96994 * 125.06092 * 180.22157 * 15 13 12 17 17 C 1.37771 * 109.86960 * 0.43525 * 15 13 12 18 18 C 1.39091 * 133.48461 * 179.76017 * 17 15 13 19 19 C 1.37779 * 119.78013 * 179.97438 * 18 17 15 20 20 C 1.38817 * 120.66785 * 0.02562 * 19 18 17 21 21 C 1.36644 * 120.52017 * 359.97438 * 20 19 18 22 22 C 1.39630 * 119.76441 * 0.02562 * 21 20 19 23 23 H 0.97004 * 120.00251 * 185.29596 * 1 2 3 24 24 H 1.00905 * 110.99840 * 307.16869 * 11 9 7 25 25 H 1.00899 * 111.00679 * 71.12337 * 11 9 7 26 26 H 1.07997 * 120.11351 * 0.02856 * 18 17 15 27 27 H 1.07999 * 119.66718 * 180.02562 * 19 18 17 28 28 H 1.07994 * 119.74184 * 180.02562 * 20 19 18 29 29 H 1.08000 * 120.11905 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2575 -2.4956 -0.1380 10 1 0.4062 -2.3567 -0.8045 11 7 0.7802 -2.9291 1.1819 12 6 2.1769 -3.5442 -0.7091 13 6 3.1672 -4.1790 -0.0589 14 17 3.5983 -3.9160 1.6020 15 7 3.7830 -5.0657 -0.8998 16 1 4.5245 -5.6416 -0.6563 17 6 3.1959 -5.0152 -2.1452 18 6 3.4290 -5.6858 -3.3412 19 6 2.6508 -5.4088 -4.4440 20 6 1.6348 -4.4655 -4.3747 21 6 1.3886 -3.7950 -3.2098 22 6 2.1651 -4.0601 -2.0800 23 1 -0.4851 -0.8365 0.0775 24 1 1.5360 -2.9522 1.8500 25 1 0.0287 -2.3392 1.5064 26 1 4.2167 -6.4218 -3.4051 27 1 2.8332 -5.9308 -5.3717 28 1 1.0337 -4.2604 -5.2481 29 1 0.5961 -3.0627 -3.1630 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612172.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:24 Heat of formation + Delta-G solvation = 23.121574 kcal Electronic energy + Delta-G solvation = -15794.756959 eV Core-core repulsion = 13128.666641 eV Total energy + Delta-G solvation = -2666.090318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.21088 -38.28581 -37.25958 -36.94238 -33.63562 -32.26955 -30.36232 -29.46640 -27.37005 -24.44254 -23.72391 -22.69836 -20.57040 -19.15514 -18.74051 -17.60814 -16.79542 -16.08241 -15.85302 -15.68961 -15.13630 -14.77372 -14.71608 -14.46440 -14.22558 -13.47754 -13.24146 -12.82339 -12.66515 -12.40737 -12.15150 -11.98250 -11.76114 -11.55443 -11.44919 -10.70419 -10.46950 -9.28727 -9.11998 -8.72164 -8.37318 -6.35361 0.13903 0.66990 0.68420 1.50086 1.55922 1.64710 1.77421 2.41223 2.55041 2.97826 3.17432 3.80830 3.96133 4.23376 4.27040 4.38489 4.55647 4.59826 4.77409 4.92666 5.10740 5.34144 5.50189 5.61486 5.68618 5.82200 5.93046 6.12630 6.17730 6.53735 6.57435 6.61186 6.90485 7.42181 8.74748 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.009003 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.673859 B = 3109.205456 C = 3902.528487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.018 4.018 3 Si 1.107 2.893 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.616 4.616 8 H 0.039 0.961 9 C 0.260 3.740 10 H 0.015 0.985 11 N -0.848 5.848 12 C -0.110 4.110 13 C 0.098 3.902 14 Cl -0.009 7.009 15 N -0.581 5.581 16 H 0.429 0.571 17 C 0.101 3.899 18 C -0.129 4.129 19 C -0.089 4.089 20 C -0.146 4.146 21 C -0.087 4.087 22 C -0.137 4.137 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.323 0.677 26 H 0.157 0.843 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -11.332 -5.405 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.218 4.218 3 Si 0.930 3.070 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.655 4.655 8 H 0.057 0.943 9 C 0.150 3.850 10 H 0.033 0.967 11 N -0.378 5.378 12 C -0.119 4.119 13 C -0.034 4.034 14 Cl 0.020 6.980 15 N -0.190 5.190 16 H 0.269 0.731 17 C -0.007 4.007 18 C -0.150 4.150 19 C -0.108 4.108 20 C -0.165 4.165 21 C -0.106 4.106 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.133 0.867 26 H 0.174 0.826 27 H 0.185 0.815 28 H 0.165 0.835 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.101 -10.446 -5.593 14.353 hybrid contribution 0.538 -0.607 1.076 1.347 sum 8.639 -11.052 -4.517 14.737 Atomic orbital electron populations 1.70918 1.07582 1.30317 1.47865 1.27068 0.96519 1.05758 0.92470 0.83057 0.74293 0.72120 0.77578 1.20796 1.19746 1.20380 1.22690 0.94770 0.93444 1.54645 0.94268 1.17275 0.91166 0.88664 0.87851 0.96699 1.59554 1.14352 1.58091 1.05753 1.20516 0.98795 0.99932 0.92691 1.20193 0.98587 0.99196 0.85452 1.98324 1.92236 1.95180 1.12303 1.41330 1.33052 1.36914 1.07754 0.73087 1.18426 0.95522 0.99635 0.87097 1.20413 1.03355 1.02153 0.89079 1.21264 0.93928 0.97002 0.98631 1.20936 1.00306 0.98188 0.97118 1.20427 0.98408 0.99338 0.92428 1.19286 1.00280 1.00723 0.93974 0.92931 0.85438 0.86692 0.82590 0.81488 0.83541 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.57 21.45 0.29 -55.17 15 2 C -0.02 -1.02 5.45 84.66 0.46 -0.56 15 3 Si 1.11 50.56 29.91 68.60 2.05 52.61 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.62 -34.50 8.52 25.60 0.22 -34.28 15 8 H 0.04 2.23 7.81 -2.91 -0.02 2.21 15 9 C 0.26 13.68 2.69 43.42 0.12 13.79 15 10 H 0.01 0.88 7.15 -2.39 -0.02 0.86 15 11 N -0.85 -41.13 9.07 -174.95 -1.59 -42.72 15 12 C -0.11 -5.17 5.26 -18.59 -0.10 -5.27 15 13 C 0.10 3.91 7.61 83.03 0.63 4.54 15 14 Cl -0.01 -0.32 26.46 -2.72 -0.07 -0.39 15 15 N -0.58 -18.61 6.07 -178.67 -1.09 -19.70 15 16 H 0.43 10.09 8.96 -92.71 -0.83 9.26 15 17 C 0.10 3.38 7.28 39.01 0.28 3.66 15 18 C -0.13 -3.21 10.08 22.37 0.23 -2.99 15 19 C -0.09 -2.04 10.01 22.30 0.22 -1.81 15 20 C -0.15 -4.12 9.97 22.04 0.22 -3.90 15 21 C -0.09 -3.33 10.05 22.23 0.22 -3.10 15 22 C -0.14 -5.76 6.35 -20.20 -0.13 -5.89 15 23 H 0.26 15.63 6.16 -92.71 -0.57 15.06 15 24 H 0.33 15.28 6.08 -89.69 -0.55 14.73 15 25 H 0.32 16.04 8.24 -89.69 -0.74 15.30 15 26 H 0.16 2.61 8.06 -2.91 -0.02 2.59 15 27 H 0.17 2.32 8.06 -2.91 -0.02 2.30 15 28 H 0.15 3.21 8.06 -2.91 -0.02 3.19 15 29 H 0.10 4.12 8.06 -2.91 -0.02 4.09 15 Total: -1.00 -67.38 266.30 1.28 -66.11 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.70 Total: 35.06 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 2.38 Total: -35.80 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -2.38 Total: -117.59 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.07 Total: -0.39 kcal Total: -67.38 1.28 -66.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612172.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.228 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds