Wall clock time and date at job start Mon Mar 30 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99791 * 2 1 4 4 H 1.48499 * 109.46983 * 239.99939 * 3 2 1 5 5 H 1.48500 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46991 * 119.99836 * 3 2 1 7 7 C 1.37874 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47459 * 59.99854 * 9 7 2 11 11 N 1.46899 * 109.47294 * 299.99771 * 9 7 2 12 12 C 1.50705 * 109.47194 * 179.97438 * 9 7 2 13 13 C 1.39643 * 120.12039 * 73.03760 * 12 9 7 14 14 C 1.46489 * 134.01435 * 359.95515 * 13 12 9 15 15 C 1.34248 * 107.00222 * 180.02562 * 14 13 12 16 16 N 1.36822 * 109.93082 * 359.97438 * 15 14 13 17 17 H 0.96996 * 125.07135 * 179.97438 * 16 15 14 18 18 C 1.37742 * 109.86838 * 0.02562 * 16 15 14 19 19 C 1.39115 * 133.49408 * 179.97438 * 18 16 15 20 20 C 1.37739 * 119.79842 * 180.02562 * 19 18 16 21 21 C 1.36708 * 120.12336 * 252.76278 * 12 9 7 22 22 Cl 1.73603 * 119.74944 * 0.02562 * 21 12 9 23 23 H 0.96998 * 119.99968 * 0.02562 * 1 2 3 24 24 H 1.00903 * 110.99905 * 307.44466 * 11 9 7 25 25 H 1.00897 * 110.99838 * 71.39114 * 11 9 7 26 26 H 1.07992 * 126.50206 * 0.02562 * 14 13 12 27 27 H 1.07995 * 125.03568 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.10224 * 0.05636 * 19 18 16 29 29 H 1.08004 * 119.67952 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1997 12 6 2.2305 -3.6446 0.0005 13 6 2.9537 -3.9482 1.1559 14 6 3.0065 -3.3762 2.5034 15 6 3.9009 -4.0951 3.2002 16 7 4.4247 -5.0810 2.4093 17 1 5.0907 -5.7272 2.6918 18 6 3.8662 -5.0186 1.1518 19 6 4.0370 -5.7648 -0.0098 20 6 3.3141 -5.4487 -1.1389 21 6 2.4100 -4.3938 -1.1288 22 17 1.5060 -4.0202 -2.5631 23 1 -0.4850 0.8400 -0.0004 24 1 0.9462 -2.4042 2.0344 25 1 -0.3729 -1.9389 1.1349 26 1 2.4345 -2.5356 2.8673 27 1 4.1674 -3.9209 4.2322 28 1 4.7339 -6.5896 -0.0262 29 1 3.4479 -6.0295 -2.0396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612337.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:08 Heat of formation + Delta-G solvation = 28.757983 kcal Electronic energy + Delta-G solvation = -15956.741992 eV Core-core repulsion = 13290.896087 eV Total energy + Delta-G solvation = -2665.845905 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03131 -38.53221 -36.82701 -36.24585 -33.65885 -31.64898 -30.18876 -29.63714 -27.72038 -24.67330 -22.69410 -22.30187 -21.27892 -18.73948 -18.11605 -17.27858 -16.95060 -16.40025 -15.89664 -15.35877 -15.18691 -14.71577 -14.11089 -13.89365 -13.53757 -13.42691 -13.29902 -12.94481 -12.86435 -12.60616 -12.29792 -11.98989 -11.84478 -11.56359 -11.03683 -10.58208 -10.32971 -9.14171 -8.94959 -8.44534 -8.03187 -6.28787 0.33380 0.64189 1.37838 1.39270 1.47125 1.52981 1.96790 2.38903 2.39739 2.99715 3.13078 3.95608 4.11559 4.30362 4.43270 4.52909 4.80386 4.82257 4.95457 5.14780 5.16161 5.41340 5.46525 5.66368 5.73348 5.87160 5.99896 6.18292 6.28077 6.72343 6.90644 6.99861 7.20865 7.44858 8.88863 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.010034 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.095336 B = 2789.827030 C = 3678.588876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.038 0.962 9 C 0.240 3.760 10 H 0.030 0.970 11 N -0.842 5.842 12 C -0.006 4.006 13 C -0.113 4.113 14 C -0.216 4.216 15 C 0.063 3.937 16 N -0.579 5.579 17 H 0.433 0.567 18 C 0.081 3.919 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.094 4.094 22 Cl -0.091 7.091 23 H 0.266 0.734 24 H 0.322 0.678 25 H 0.338 0.662 26 H 0.131 0.869 27 H 0.214 0.786 28 H 0.164 0.836 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.638 -10.709 4.696 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.056 0.944 9 C 0.130 3.870 10 H 0.048 0.952 11 N -0.371 5.371 12 C -0.008 4.008 13 C -0.118 4.118 14 C -0.241 4.241 15 C -0.063 4.063 16 N -0.184 5.184 17 H 0.273 0.727 18 C -0.027 4.027 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.122 4.122 22 Cl -0.062 7.062 23 H 0.075 0.925 24 H 0.134 0.866 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.231 0.769 28 H 0.181 0.819 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.357 -11.399 4.436 15.400 hybrid contribution 0.376 2.128 -0.225 2.173 sum 9.733 -9.271 4.210 14.086 Atomic orbital electron populations 1.69871 1.06790 1.27749 1.51166 1.25645 0.95673 1.01910 0.94373 0.85700 0.78481 0.79343 0.78623 1.20467 1.20604 1.19514 1.21805 0.92707 0.92214 1.51335 0.94395 1.17891 0.89378 0.88543 0.91194 0.95201 1.59547 1.13881 1.59040 1.04641 1.19495 0.95537 0.94612 0.91173 1.19101 0.99471 0.98496 0.94742 1.21803 1.05425 1.04184 0.92716 1.22296 0.96223 0.89855 0.97950 1.41627 1.38484 1.30398 1.07908 0.72686 1.18499 0.97532 0.98337 0.88328 1.20114 1.03515 1.01889 0.89352 1.20840 0.95175 0.95927 0.99631 1.20397 1.01945 1.01452 0.88371 1.98286 1.74890 1.94665 1.38358 0.92513 0.86552 0.84839 0.85113 0.76934 0.81855 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 11.66 21.45 0.25 -52.05 15 2 C 0.02 1.32 5.39 84.65 0.46 1.78 15 3 Si 0.95 44.31 29.54 68.60 2.03 46.34 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.54 -30.53 8.56 25.60 0.22 -30.31 15 8 H 0.04 2.20 7.74 -2.91 -0.02 2.18 15 9 C 0.24 12.78 2.71 43.42 0.12 12.89 15 10 H 0.03 1.76 6.26 -2.39 -0.01 1.74 15 11 N -0.84 -42.96 8.96 -174.95 -1.57 -44.52 15 12 C -0.01 -0.29 4.88 -19.88 -0.10 -0.39 15 13 C -0.11 -4.63 5.85 -20.20 -0.12 -4.75 15 14 C -0.22 -7.82 9.91 23.51 0.23 -7.59 15 15 C 0.06 1.56 11.82 83.00 0.98 2.54 15 16 N -0.58 -13.36 6.07 -187.59 -1.14 -14.50 15 17 H 0.43 5.97 8.96 -92.71 -0.83 5.14 15 18 C 0.08 2.60 7.28 39.02 0.28 2.88 15 19 C -0.13 -3.61 10.07 22.36 0.23 -3.39 15 20 C -0.10 -3.13 9.79 22.32 0.22 -2.91 15 21 C -0.09 -3.93 6.28 22.08 0.14 -3.79 15 22 Cl -0.09 -3.78 26.98 -2.72 -0.07 -3.86 15 23 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 24 H 0.32 15.58 5.61 -89.69 -0.50 15.08 15 25 H 0.34 18.32 7.32 -89.70 -0.66 17.67 15 26 H 0.13 5.06 6.27 -2.91 -0.02 5.04 15 27 H 0.21 3.08 8.06 -2.91 -0.02 3.06 15 28 H 0.16 3.05 8.06 -2.91 -0.02 3.03 15 29 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 Total: -1.00 -68.11 261.70 1.39 -66.72 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.77 Total: 34.91 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 2.66 Total: -33.03 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -2.46 Total: -111.08 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.07 Total: -3.86 kcal Total: -68.11 1.39 -66.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612337.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds