Wall clock time and date at job start Mon Mar 30 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00072 * 2 1 4 4 H 1.48498 * 109.47327 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47028 * 119.99810 * 3 2 1 6 6 H 1.48502 * 109.47011 * 239.99720 * 3 2 1 7 7 C 1.37873 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 344.39632 * 7 2 1 9 9 C 1.50699 * 120.00002 * 164.39591 * 7 2 1 10 10 H 1.09004 * 109.47240 * 54.81898 * 9 7 2 11 11 N 1.46904 * 109.47087 * 294.82427 * 9 7 2 12 12 C 1.50700 * 109.47655 * 174.82278 * 9 7 2 13 13 N 1.36989 * 125.05318 * 99.69029 * 12 9 7 14 14 H 0.97005 * 125.06893 * 0.02562 * 13 12 9 15 15 C 1.37674 * 109.86550 * 179.88642 * 13 12 9 16 16 C 1.39134 * 133.49362 * 180.10281 * 15 13 12 17 17 C 1.37740 * 119.78221 * 180.29270 * 16 15 13 18 18 C 1.38833 * 120.66787 * 0.02707 * 17 16 15 19 19 C 1.36625 * 120.52877 * 359.95169 * 18 17 16 20 20 C 1.39624 * 119.76592 * 0.04533 * 19 18 17 21 21 C 1.34283 * 125.05083 * 280.00322 * 12 9 7 22 22 Cl 1.73602 * 126.49940 * 359.97438 * 21 12 9 23 23 H 0.96997 * 120.00092 * 174.83519 * 1 2 3 24 24 H 1.00904 * 110.99471 * 294.09379 * 11 9 7 25 25 H 1.00901 * 110.99943 * 58.04264 * 11 9 7 26 26 H 1.07999 * 120.10577 * 0.32132 * 16 15 13 27 27 H 1.08000 * 119.66643 * 180.02562 * 17 16 15 28 28 H 1.08001 * 119.73467 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.11979 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4944 -2.1120 0.2525 9 6 3.4698 -1.2183 -0.3505 10 1 4.0094 -0.5243 0.2939 11 7 3.6439 -0.8197 -1.7537 12 6 4.0108 -2.6110 -0.1532 13 7 4.2090 -3.5270 -1.1523 14 1 4.0225 -3.3757 -2.0922 15 6 4.7154 -4.6932 -0.6241 16 6 5.0905 -5.9124 -1.1797 17 6 5.5696 -6.9160 -0.3670 18 6 5.6822 -6.7245 1.0034 19 6 5.3201 -5.5351 1.5700 20 6 4.8319 -4.5040 0.7650 21 6 4.3645 -3.1406 1.0291 22 17 4.2831 -2.3584 2.5767 23 1 -0.4850 -0.8366 -0.0756 24 1 3.2345 -1.5002 -2.3762 25 1 3.2600 0.0987 -1.9190 26 1 5.0067 -6.0711 -2.2446 27 1 5.8606 -7.8615 -0.8003 28 1 6.0594 -7.5219 1.6266 29 1 5.4108 -5.3932 2.6367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238625638.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:15 Heat of formation + Delta-G solvation = 43.437816 kcal Electronic energy + Delta-G solvation = -15653.373453 eV Core-core repulsion = 12988.164114 eV Total energy + Delta-G solvation = -2665.209339 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92688 -37.03536 -35.64997 -34.59905 -31.85620 -31.46430 -28.93121 -28.58370 -25.79371 -23.02218 -21.76548 -20.81124 -19.50540 -17.86487 -17.50968 -16.01073 -15.52370 -14.56682 -14.37940 -14.11357 -13.65580 -13.59195 -13.16814 -12.90018 -12.41627 -12.20801 -11.58277 -11.44428 -11.36435 -11.12248 -10.81447 -10.52182 -10.17603 -9.94239 -9.45228 -9.13865 -8.64057 -7.99792 -7.75153 -7.19344 -6.58895 -4.36253 1.41472 1.86446 2.84921 3.09960 3.20378 3.33338 3.46932 3.70165 4.14616 4.28866 4.92368 5.03746 5.16168 5.23095 5.44704 5.63153 5.73904 5.82770 6.02960 6.10163 6.26742 6.58131 6.71657 6.80643 6.89408 7.14091 7.42968 7.52398 7.85502 8.01297 8.16456 8.22256 8.68007 9.35391 10.69979 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.007372 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.545046 B = 3797.202824 C = 4235.728603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.039 3.961 3 Si 1.036 2.964 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.622 4.622 8 H 0.061 0.939 9 C 0.230 3.770 10 H 0.067 0.933 11 N -0.860 5.860 12 C 0.177 3.823 13 N -0.578 5.578 14 H 0.418 0.582 15 C 0.094 3.906 16 C -0.127 4.127 17 C -0.111 4.111 18 C -0.151 4.151 19 C -0.072 4.072 20 C -0.086 4.086 21 C -0.150 4.150 22 Cl -0.048 7.048 23 H 0.271 0.729 24 H 0.318 0.682 25 H 0.341 0.659 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -8.647 -1.347 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.169 4.169 3 Si 0.864 3.136 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.662 4.662 8 H 0.079 0.921 9 C 0.120 3.880 10 H 0.084 0.916 11 N -0.392 5.392 12 C 0.066 3.934 13 N -0.182 5.182 14 H 0.256 0.744 15 C -0.013 4.013 16 C -0.148 4.148 17 C -0.130 4.130 18 C -0.170 4.170 19 C -0.091 4.091 20 C -0.092 4.092 21 C -0.183 4.183 22 Cl -0.019 7.019 23 H 0.081 0.919 24 H 0.129 0.871 25 H 0.157 0.843 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.490 -6.921 -1.095 12.615 hybrid contribution -1.103 -1.593 -0.298 1.960 sum 9.387 -8.514 -1.393 12.749 Atomic orbital electron populations 1.70825 1.06915 1.30771 1.43899 1.25781 0.96182 1.02222 0.92696 0.84114 0.75562 0.76195 0.77750 1.20707 1.20234 1.19902 1.22434 0.92820 0.96977 1.53946 0.92097 1.18232 0.95940 0.85617 0.88206 0.91591 1.59879 1.65367 1.07556 1.06396 1.20527 0.94515 0.92677 0.85707 1.41628 1.56379 1.10469 1.09687 0.74357 1.18171 1.01794 0.88805 0.92559 1.19961 1.04350 0.91040 0.99412 1.20678 1.00725 0.98044 0.93573 1.20512 1.04191 0.97379 0.94951 1.20211 0.97849 0.91924 0.99100 1.18909 1.04347 0.93484 0.92430 1.20193 1.17730 0.93484 0.86914 1.98272 1.97688 1.79844 1.26115 0.91866 0.87123 0.84311 0.86436 0.86185 0.86416 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.70 55.43 0.76 -25.19 15 2 C 0.04 1.04 5.38 -17.82 -0.10 0.95 15 3 Si 1.04 23.48 26.42 -169.99 -4.49 18.98 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.54 5.69 56.52 0.32 -5.22 15 7 C -0.62 -16.35 9.05 -34.44 -0.31 -16.66 15 8 H 0.06 1.80 7.99 -52.49 -0.42 1.38 15 9 C 0.23 5.21 2.42 -70.01 -0.17 5.04 15 10 H 0.07 1.57 6.84 -51.93 -0.35 1.21 15 11 N -0.86 -17.35 9.12 -6.65 -0.06 -17.41 15 12 C 0.18 3.74 6.00 -81.68 -0.49 3.25 15 13 N -0.58 -10.42 5.88 -6.91 -0.04 -10.46 15 14 H 0.42 6.48 7.80 -40.82 -0.32 6.16 15 15 C 0.09 1.64 7.28 -83.99 -0.61 1.03 15 16 C -0.13 -1.81 10.08 -39.43 -0.40 -2.21 15 17 C -0.11 -1.43 10.01 -39.54 -0.40 -1.83 15 18 C -0.15 -2.03 9.97 -39.94 -0.40 -2.43 15 19 C -0.07 -1.15 10.05 -39.65 -0.40 -1.55 15 20 C -0.09 -1.61 6.37 -105.12 -0.67 -2.28 15 21 C -0.15 -3.14 6.89 -37.64 -0.26 -3.40 15 22 Cl -0.05 -0.96 29.01 -51.86 -1.50 -2.46 15 23 H 0.27 7.94 8.73 -40.82 -0.36 7.58 15 24 H 0.32 5.91 7.82 -39.29 -0.31 5.61 15 25 H 0.34 7.03 5.50 -39.29 -0.22 6.82 15 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -29.01 264.43 -8.09 -37.10 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -2.54 Total: 15.54 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -4.20 Total: -20.08 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.66 Total: -53.06 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.49 Total: 18.98 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.01 -8.09 -37.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238625638.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.538 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds