Wall clock time and date at job start Mon Mar 30 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99888 * 2 1 4 4 H 1.48500 * 109.47230 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.46835 * 29.99793 * 3 2 1 6 6 H 1.48500 * 109.47309 * 149.99789 * 3 2 1 7 7 C 1.37870 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00551 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00070 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47134 * 59.99479 * 9 7 2 11 11 N 1.46905 * 109.46650 * 299.99788 * 9 7 2 12 12 C 1.50693 * 109.47369 * 179.97438 * 9 7 2 13 13 C 1.34222 * 125.03916 * 244.99693 * 12 9 7 14 14 C 1.46493 * 106.99609 * 180.02562 * 13 12 9 15 15 C 1.40654 * 106.06466 * 0.02562 * 14 13 12 16 16 C 1.39093 * 119.43981 * 180.02562 * 15 14 13 17 17 C 1.37757 * 119.94218 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.68028 * 359.91597 * 17 16 15 19 19 C 1.37758 * 120.37363 * 0.12507 * 18 17 16 20 20 Cl 1.73594 * 120.18680 * 180.19398 * 19 18 17 21 21 N 1.36860 * 125.03791 * 65.04388 * 12 9 7 22 22 H 0.97006 * 125.06020 * 359.92288 * 21 12 9 23 23 H 0.96995 * 120.00118 * 0.02562 * 1 2 3 24 24 H 1.00892 * 111.00655 * 299.99941 * 11 9 7 25 25 H 1.00905 * 111.00145 * 63.95618 * 11 9 7 26 26 H 1.08004 * 126.49843 * 0.03426 * 13 12 9 27 27 H 1.07994 * 120.03193 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.66155 * 179.97438 * 17 16 15 29 29 H 1.08007 * 119.81275 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2305 -3.6445 0.0005 13 6 2.3783 -4.5320 -0.9954 14 6 3.4288 -5.4664 -0.5840 15 6 3.8482 -5.0440 0.6904 16 6 4.8523 -5.7471 1.3476 17 6 5.4268 -6.8467 0.7487 18 6 5.0131 -7.2654 -0.5083 19 6 4.0209 -6.5837 -1.1780 20 17 3.5037 -7.1146 -2.7478 21 7 3.1005 -3.9344 1.0165 22 1 3.1791 -3.4327 1.8430 23 1 -0.4850 0.8400 -0.0004 24 1 0.9638 -2.5250 2.0390 25 1 -0.3012 -1.8572 1.1908 26 1 1.8273 -4.5532 -1.9241 27 1 5.1820 -5.4309 2.3262 28 1 6.2064 -7.3891 1.2629 29 1 5.4729 -8.1296 -0.9647 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626172.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:34 Heat of formation + Delta-G solvation = 18.735970 kcal Electronic energy + Delta-G solvation = -15401.291750 eV Core-core repulsion = 12735.011258 eV Total energy + Delta-G solvation = -2666.280492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.15124 -38.39534 -37.18612 -36.14821 -33.28958 -32.61804 -30.16464 -29.73405 -27.90827 -24.77735 -23.14858 -22.21285 -21.05663 -18.81053 -18.67322 -17.10244 -16.87114 -16.25385 -15.71637 -15.52461 -15.28020 -15.17292 -14.74572 -13.90841 -13.77731 -13.49955 -13.22498 -12.92662 -12.87107 -12.62652 -12.10759 -12.07551 -11.95337 -11.82897 -11.72089 -10.78558 -10.42733 -9.36263 -9.06340 -8.53936 -8.17938 -6.46520 0.09057 0.66192 1.29874 1.35581 1.38839 1.46994 1.87465 2.29825 2.34066 2.87015 2.99987 3.82390 4.03209 4.23947 4.29769 4.43168 4.53562 4.70953 4.84571 4.96293 5.04208 5.25596 5.44971 5.51236 5.56329 5.74798 5.82299 6.02197 6.26670 6.52801 6.73225 6.78433 7.01019 7.30671 8.75389 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030190 B = 0.005796 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.237355 B = 4830.017675 C = 5108.908255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.566 4.566 8 H 0.049 0.951 9 C 0.264 3.736 10 H 0.030 0.970 11 N -0.840 5.840 12 C 0.143 3.857 13 C -0.245 4.245 14 C -0.119 4.119 15 C 0.086 3.914 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.137 4.137 19 C -0.012 4.012 20 Cl -0.080 7.080 21 N -0.575 5.575 22 H 0.421 0.579 23 H 0.271 0.729 24 H 0.318 0.682 25 H 0.352 0.648 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.172 0.828 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.828 -11.052 2.753 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.606 4.606 8 H 0.067 0.933 9 C 0.153 3.847 10 H 0.048 0.952 11 N -0.369 5.369 12 C 0.032 3.968 13 C -0.270 4.270 14 C -0.125 4.125 15 C -0.022 4.022 16 C -0.144 4.144 17 C -0.111 4.111 18 C -0.157 4.157 19 C -0.039 4.039 20 Cl -0.051 7.051 21 N -0.178 5.178 22 H 0.259 0.741 23 H 0.080 0.920 24 H 0.127 0.873 25 H 0.167 0.833 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.190 0.810 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.364 -11.616 2.432 15.117 hybrid contribution 0.232 2.357 -0.025 2.369 sum 9.596 -9.258 2.407 13.550 Atomic orbital electron populations 1.69814 1.06900 1.28349 1.49869 1.25691 0.95712 1.02280 0.93595 0.85514 0.78602 0.79072 0.78147 1.20568 1.20412 1.19549 1.21929 0.93346 0.92035 1.53244 0.93293 1.17560 0.88104 0.87326 0.91675 0.95227 1.59438 1.18053 1.55814 1.03634 1.20798 0.92210 0.95934 0.87856 1.21350 1.05082 0.99214 1.01375 1.19063 1.00206 0.97547 0.95678 1.18529 0.97447 0.90959 0.95315 1.20489 0.95841 0.96766 1.01340 1.21104 1.00157 0.95725 0.94097 1.21092 0.97117 1.01396 0.96110 1.20475 0.99386 0.96223 0.87862 1.98321 1.90600 1.89515 1.26695 1.41668 1.32232 1.25315 1.18564 0.74062 0.92001 0.87263 0.83269 0.84969 0.83224 0.81014 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.43 11.54 21.44 0.25 -48.18 15 2 C 0.03 1.48 5.38 84.65 0.46 1.93 15 3 Si 0.96 41.34 29.54 68.60 2.03 43.36 15 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.57 -29.31 8.71 25.60 0.22 -29.09 15 8 H 0.05 2.57 7.74 -2.91 -0.02 2.54 15 9 C 0.26 12.98 3.18 43.42 0.14 13.12 15 10 H 0.03 1.65 8.09 -2.39 -0.02 1.63 15 11 N -0.84 -38.58 9.18 -174.95 -1.61 -40.19 15 12 C 0.14 6.22 5.82 40.86 0.24 6.46 15 13 C -0.25 -10.47 10.83 23.51 0.25 -10.21 15 14 C -0.12 -4.45 6.21 -20.18 -0.13 -4.57 15 15 C 0.09 2.90 7.27 39.01 0.28 3.18 15 16 C -0.12 -3.10 10.07 22.36 0.23 -2.88 15 17 C -0.09 -1.92 10.01 22.29 0.22 -1.70 15 18 C -0.14 -3.34 9.81 22.29 0.22 -3.12 15 19 C -0.01 -0.39 6.35 22.51 0.14 -0.25 15 20 Cl -0.08 -2.40 28.91 -2.72 -0.08 -2.47 15 21 N -0.58 -21.14 6.07 -175.93 -1.07 -22.21 15 22 H 0.42 13.72 8.96 -92.70 -0.83 12.89 15 23 H 0.27 13.69 8.31 -92.71 -0.77 12.92 15 24 H 0.32 13.39 8.98 -89.70 -0.81 12.58 15 25 H 0.35 17.33 7.08 -89.69 -0.63 16.69 15 26 H 0.13 5.63 8.06 -2.91 -0.02 5.61 15 27 H 0.15 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.17 2.11 8.06 -2.91 -0.02 2.09 15 29 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -58.04 271.58 0.74 -57.30 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.06 Total: 39.52 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 2.28 Total: -27.12 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -2.43 Total: -110.58 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.08 Total: -2.47 kcal Total: -58.04 0.74 -57.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626172.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -58.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds