Wall clock time and date at job start Mon Mar 30 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47141 * 270.00311 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00449 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99916 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.34244 * 125.03255 * 84.69522 * 12 9 7 14 14 C 1.46493 * 107.00062 * 179.85671 * 13 12 9 15 15 C 1.39640 * 134.01393 * 180.10218 * 14 13 12 16 16 C 1.36722 * 119.75465 * 180.31894 * 15 14 13 17 17 Cl 1.73601 * 119.74953 * 180.02562 * 16 15 14 18 18 C 1.38923 * 120.49835 * 359.97438 * 16 15 14 19 19 C 1.37741 * 120.65838 * 0.02562 * 18 16 15 20 20 C 1.39122 * 119.79376 * 0.02879 * 19 18 16 21 21 N 1.36822 * 125.03552 * 264.99617 * 12 9 7 22 22 H 0.97001 * 125.07071 * 0.02643 * 21 12 9 23 23 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 25 25 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 26 26 H 1.07998 * 126.50398 * 359.96498 * 13 12 9 27 27 H 1.08001 * 120.12766 * 0.35286 * 15 14 13 28 28 H 1.08005 * 119.67027 * 180.02562 * 18 16 15 29 29 H 1.08003 * 120.10169 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.8086 -4.1651 1.0913 14 6 3.6793 -5.2529 0.6392 15 6 4.5244 -6.1539 1.2904 16 6 5.2270 -7.0731 0.5620 17 17 6.2770 -8.1935 1.3719 18 6 5.1062 -7.1179 -0.8212 19 6 4.2782 -6.2383 -1.4829 20 6 3.5548 -5.2940 -0.7613 21 7 2.6667 -4.3040 -1.1193 22 1 2.3920 -4.1038 -2.0278 23 1 -0.4850 0.8399 0.0004 24 1 -0.1577 -3.4145 1.1881 25 1 0.9639 -2.5269 2.0367 26 1 2.6587 -3.8442 2.1116 27 1 4.6222 -6.1251 2.3656 28 1 5.6672 -7.8499 -1.3834 29 1 4.1914 -6.2809 -2.5586 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238626284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:55 Heat of formation + Delta-G solvation = 43.943297 kcal Electronic energy + Delta-G solvation = -15252.809486 eV Core-core repulsion = 12587.622065 eV Total energy + Delta-G solvation = -2665.187420 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.90059 -37.36714 -35.90192 -34.24982 -31.83946 -31.31360 -28.95590 -27.97150 -26.15052 -23.24807 -21.70986 -21.23149 -19.41206 -17.45117 -16.60997 -16.17083 -15.34203 -14.57104 -14.31831 -14.12142 -13.96687 -13.65237 -13.02626 -12.67926 -12.39763 -12.33296 -12.07309 -11.25731 -11.14885 -10.90218 -10.88381 -10.57592 -10.54720 -9.99404 -9.51953 -9.28930 -8.56794 -7.75846 -7.47121 -7.18880 -6.02367 -4.19009 1.31740 1.67721 2.34567 3.24557 3.26197 3.34355 3.40009 3.57550 4.02407 4.39076 4.88055 5.11977 5.23025 5.42656 5.51567 5.57117 5.95971 6.05475 6.12387 6.15172 6.32562 6.45357 6.61454 6.80926 6.99173 7.30008 7.56670 7.76999 7.91913 8.03711 8.44933 8.83345 8.96256 9.51147 11.01704 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.004810 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.024639 B = 5819.889922 C = 5881.277877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.274 3.726 10 H 0.047 0.953 11 N -0.799 5.799 12 C 0.114 3.886 13 C -0.235 4.235 14 C -0.087 4.087 15 C -0.068 4.068 16 C -0.063 4.063 17 Cl -0.091 7.091 18 C -0.110 4.110 19 C -0.114 4.114 20 C 0.087 3.913 21 N -0.586 5.586 22 H 0.414 0.586 23 H 0.258 0.742 24 H 0.302 0.698 25 H 0.324 0.676 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -12.137 -0.965 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.163 3.837 10 H 0.065 0.935 11 N -0.324 5.324 12 C 0.002 3.998 13 C -0.259 4.259 14 C -0.093 4.093 15 C -0.087 4.087 16 C -0.091 4.091 17 Cl -0.062 7.062 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.022 4.022 21 N -0.187 5.187 22 H 0.251 0.749 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.159 0.841 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.368 -11.370 -1.247 13.091 hybrid contribution 1.092 0.016 -0.128 1.100 sum 7.460 -11.354 -1.376 13.655 Atomic orbital electron populations 1.70086 1.05718 1.26126 1.45952 1.24935 0.94690 0.98721 0.93874 0.86672 0.80060 0.83574 0.78068 1.20729 1.21085 1.19842 1.20767 0.92385 0.88957 1.55367 0.92507 1.18018 0.86672 0.87266 0.91757 0.93486 1.59268 1.27099 1.41906 1.04151 1.23123 0.97615 0.94501 0.84534 1.21230 1.05061 1.01001 0.98582 1.19139 0.99860 0.98161 0.92105 1.20033 0.95429 0.93647 0.99624 1.20128 0.99679 0.96679 0.92578 1.98323 1.66106 1.61855 1.79940 1.20455 1.00318 1.00188 0.92039 1.19887 0.98721 0.95881 0.98966 1.18376 0.96011 0.93482 0.94305 1.42048 1.38405 1.28776 1.09522 0.74891 0.93167 0.88749 0.86298 0.84113 0.85519 0.85394 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.35 12.77 55.43 0.71 -22.65 15 2 C 0.09 2.27 5.39 -17.82 -0.10 2.17 15 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.54 -13.90 8.71 -34.44 -0.30 -14.20 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.27 6.27 3.12 -70.01 -0.22 6.06 15 10 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 11 N -0.80 -17.46 8.38 -6.65 -0.06 -17.52 15 12 C 0.11 2.26 6.07 -81.78 -0.50 1.77 15 13 C -0.24 -4.47 10.33 -37.67 -0.39 -4.86 15 14 C -0.09 -1.54 6.37 -105.14 -0.67 -2.21 15 15 C -0.07 -1.07 9.81 -39.61 -0.39 -1.45 15 16 C -0.06 -0.90 6.28 -39.88 -0.25 -1.15 15 17 Cl -0.09 -1.15 28.93 -51.86 -1.50 -2.65 15 18 C -0.11 -1.47 9.79 -39.51 -0.39 -1.86 15 19 C -0.11 -1.59 10.08 -39.44 -0.40 -1.99 15 20 C 0.09 1.46 7.28 -83.97 -0.61 0.85 15 21 N -0.59 -10.17 6.07 -6.95 -0.04 -10.21 15 22 H 0.41 6.22 8.96 -40.82 -0.37 5.86 15 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 24 H 0.30 5.88 9.06 -39.29 -0.36 5.53 15 25 H 0.32 6.80 7.94 -39.29 -0.31 6.49 15 26 H 0.14 2.54 7.39 -52.49 -0.39 2.16 15 27 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.13 1.39 8.06 -52.48 -0.42 0.97 15 29 H 0.12 1.39 8.06 -52.48 -0.42 0.97 15 LS Contribution 271.96 15.07 4.10 4.10 Total: -1.00 -28.07 271.96 -8.67 -36.74 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -2.65 Total: 13.51 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -4.20 Total: -16.88 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.61 Total: -50.38 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.07 -8.67 -36.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.685 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds