Wall clock time and date at job start Mon Mar 30 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47141 * 270.00311 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00449 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99916 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.34244 * 125.03255 * 84.69522 * 12 9 7 14 14 C 1.46493 * 107.00062 * 179.85671 * 13 12 9 15 15 C 1.39640 * 134.01393 * 180.10218 * 14 13 12 16 16 C 1.36722 * 119.75465 * 180.31894 * 15 14 13 17 17 Cl 1.73601 * 119.74953 * 180.02562 * 16 15 14 18 18 C 1.38923 * 120.49835 * 359.97438 * 16 15 14 19 19 C 1.37741 * 120.65838 * 0.02562 * 18 16 15 20 20 C 1.39122 * 119.79376 * 0.02879 * 19 18 16 21 21 N 1.36822 * 125.03552 * 264.99617 * 12 9 7 22 22 H 0.97001 * 125.07071 * 0.02643 * 21 12 9 23 23 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 25 25 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 26 26 H 1.07998 * 126.50398 * 359.96498 * 13 12 9 27 27 H 1.08001 * 120.12766 * 0.35286 * 15 14 13 28 28 H 1.08005 * 119.67027 * 180.02562 * 18 16 15 29 29 H 1.08003 * 120.10169 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.8086 -4.1651 1.0913 14 6 3.6793 -5.2529 0.6392 15 6 4.5244 -6.1539 1.2904 16 6 5.2270 -7.0731 0.5620 17 17 6.2770 -8.1935 1.3719 18 6 5.1062 -7.1179 -0.8212 19 6 4.2782 -6.2383 -1.4829 20 6 3.5548 -5.2940 -0.7613 21 7 2.6667 -4.3040 -1.1193 22 1 2.3920 -4.1038 -2.0278 23 1 -0.4850 0.8399 0.0004 24 1 -0.1577 -3.4145 1.1881 25 1 0.9639 -2.5269 2.0367 26 1 2.6587 -3.8442 2.1116 27 1 4.6222 -6.1251 2.3656 28 1 5.6672 -7.8499 -1.3834 29 1 4.1914 -6.2809 -2.5586 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:54 Heat of formation + Delta-G solvation = 26.451563 kcal Electronic energy + Delta-G solvation = -15253.567984 eV Core-core repulsion = 12587.622065 eV Total energy + Delta-G solvation = -2665.945919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21548 -38.58317 -37.10302 -35.92077 -33.58921 -32.73270 -30.21647 -29.38201 -28.00861 -24.84581 -23.03179 -22.52122 -20.90989 -18.76807 -18.50490 -17.44859 -16.81834 -16.30822 -15.91736 -15.45238 -15.29370 -14.90640 -14.61800 -14.20273 -13.78552 -13.67192 -13.42103 -13.01311 -12.71663 -12.63628 -12.26270 -11.98940 -11.77159 -11.61992 -11.26347 -10.69198 -10.59057 -9.18352 -8.96418 -8.61225 -8.03044 -6.25598 0.11227 0.48484 1.24242 1.42137 1.44986 1.53501 1.83440 2.26004 2.47068 2.80862 3.21596 3.72201 3.94631 4.17586 4.29736 4.39554 4.45900 4.64424 4.69048 4.95365 5.03557 5.10109 5.32916 5.36445 5.71160 5.72750 5.84486 6.06391 6.16674 6.59097 6.68929 7.01644 7.18726 7.47664 8.99609 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.004810 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.024639 B = 5819.889922 C = 5881.277877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.041 3.959 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.044 0.956 9 C 0.282 3.718 10 H 0.022 0.978 11 N -0.808 5.808 12 C 0.092 3.908 13 C -0.237 4.237 14 C -0.114 4.114 15 C -0.076 4.076 16 C -0.065 4.065 17 Cl -0.073 7.073 18 C -0.099 4.099 19 C -0.111 4.111 20 C 0.077 3.923 21 N -0.583 5.583 22 H 0.422 0.578 23 H 0.258 0.742 24 H 0.315 0.685 25 H 0.328 0.672 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 -13.465 -1.478 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.063 0.937 9 C 0.171 3.829 10 H 0.040 0.960 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.262 4.262 14 C -0.119 4.119 15 C -0.095 4.095 16 C -0.093 4.093 17 Cl -0.044 7.044 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.031 4.031 21 N -0.186 5.186 22 H 0.260 0.740 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.141 0.859 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.991 -12.712 -1.772 15.119 hybrid contribution 0.695 0.258 0.045 0.743 sum 8.686 -12.453 -1.727 15.281 Atomic orbital electron populations 1.70189 1.06874 1.26704 1.47252 1.25595 0.95397 1.01595 0.93739 0.85750 0.78699 0.80066 0.78119 1.20148 1.20880 1.19940 1.21010 0.91995 0.90662 1.54753 0.93724 1.17591 0.86774 0.87536 0.91041 0.95975 1.59094 1.27460 1.42965 1.03980 1.22497 0.98613 0.94995 0.85910 1.21345 1.05064 1.01388 0.98377 1.19265 1.00948 0.98797 0.92936 1.20168 0.95359 0.93675 1.00312 1.20311 0.99321 0.96414 0.93247 1.98334 1.65365 1.61000 1.79748 1.20878 0.99346 0.99899 0.91776 1.20270 0.97692 0.94696 1.00546 1.18722 0.96147 0.93824 0.94411 1.41923 1.38562 1.28848 1.09302 0.73998 0.93271 0.87334 0.85902 0.84140 0.84675 0.82223 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.07 12.77 21.45 0.27 -48.80 15 2 C 0.04 2.22 5.39 84.65 0.46 2.67 15 3 Si 0.95 42.59 29.54 68.60 2.03 44.61 15 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 7 C -0.55 -28.81 8.71 25.60 0.22 -28.59 15 8 H 0.04 2.41 7.74 -2.91 -0.02 2.39 15 9 C 0.28 13.26 3.12 43.42 0.14 13.39 15 10 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 11 N -0.81 -36.12 8.38 -174.95 -1.47 -37.59 15 12 C 0.09 3.71 6.07 40.87 0.25 3.95 15 13 C -0.24 -9.11 10.33 23.51 0.24 -8.87 15 14 C -0.11 -3.95 6.37 -20.20 -0.13 -4.08 15 15 C -0.08 -2.26 9.81 22.25 0.22 -2.04 15 16 C -0.07 -1.69 6.28 22.08 0.14 -1.55 15 17 Cl -0.07 -1.64 28.93 -2.72 -0.08 -1.72 15 18 C -0.10 -2.29 9.79 22.32 0.22 -2.07 15 19 C -0.11 -2.77 10.08 22.36 0.23 -2.55 15 20 C 0.08 2.48 7.28 39.02 0.28 2.77 15 21 N -0.58 -20.14 6.07 -175.89 -1.07 -21.21 15 22 H 0.42 12.63 8.96 -92.71 -0.83 11.80 15 23 H 0.26 13.86 8.31 -92.71 -0.77 13.09 15 24 H 0.32 12.53 9.06 -89.69 -0.81 11.71 15 25 H 0.33 14.07 7.94 -89.70 -0.71 13.36 15 26 H 0.14 5.19 7.39 -2.91 -0.02 5.17 15 27 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 28 H 0.16 2.68 8.06 -2.91 -0.02 2.65 15 29 H 0.16 2.85 8.06 -2.91 -0.02 2.83 15 Total: -1.00 -59.47 271.96 0.81 -58.66 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -1.14 Total: 33.00 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 2.26 Total: -26.96 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -2.26 Total: -107.59 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -59.47 0.81 -58.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.109 kcal (2) G-P(sol) polarization free energy of solvation -59.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds