Wall clock time and date at job start Mon Mar 30 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00225 * 3 2 1 7 7 C 1.37879 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.34223 * 125.03815 * 244.99601 * 12 9 7 14 14 C 1.46505 * 106.99904 * 179.97438 * 13 12 9 15 15 C 1.39639 * 134.00520 * 180.02562 * 14 13 12 16 16 C 1.36614 * 119.77565 * 180.02562 * 15 14 13 17 17 C 1.38932 * 120.52193 * 359.92776 * 16 15 14 18 18 Cl 1.73599 * 119.68490 * 180.02562 * 17 16 15 19 19 C 1.37860 * 120.63214 * 0.04349 * 17 16 15 20 20 C 1.39112 * 119.77282 * 359.97438 * 19 17 16 21 21 N 1.36869 * 125.03551 * 64.69545 * 12 9 7 22 22 H 0.97002 * 125.06512 * 359.97438 * 21 12 9 23 23 H 0.97001 * 119.99716 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 25 25 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 26 26 H 1.08003 * 126.49852 * 0.02784 * 13 12 9 27 27 H 1.07994 * 120.11357 * 359.96300 * 15 14 13 28 28 H 1.08004 * 119.74031 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.11142 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8747 -0.6807 0.8905 11 7 4.0017 -0.5007 -1.1988 12 6 4.0140 -2.6148 -0.0001 13 6 4.7084 -3.1867 0.9960 14 6 4.9916 -4.5641 0.5850 15 6 5.6628 -5.6351 1.1785 16 6 5.7575 -6.8268 0.5173 17 6 5.1899 -6.9824 -0.7412 18 17 5.3228 -8.5065 -1.5617 19 6 4.5225 -5.9381 -1.3448 20 6 4.4147 -4.7160 -0.6889 21 7 3.8247 -3.5150 -1.0135 22 1 3.3471 -3.3337 -1.8381 23 1 -0.4850 0.8401 0.0004 24 1 3.6784 -0.9578 -2.0383 25 1 3.7322 0.4715 -1.1898 26 1 5.0019 -2.7202 1.9249 27 1 6.1064 -5.5215 2.1566 28 1 6.2772 -7.6546 0.9767 29 1 4.0847 -6.0682 -2.3235 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238626464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:03 Heat of formation + Delta-G solvation = 46.123392 kcal Electronic energy + Delta-G solvation = -15313.406505 eV Core-core repulsion = 12648.313621 eV Total energy + Delta-G solvation = -2665.092884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.90470 -37.39752 -36.01402 -34.59759 -31.98148 -31.54988 -29.07613 -28.45085 -26.20260 -23.29047 -21.92336 -20.89181 -19.58596 -17.61975 -17.17397 -15.88417 -15.77972 -15.05254 -14.32651 -14.18789 -14.05792 -13.68547 -13.04943 -12.86187 -12.66277 -12.38036 -11.87384 -11.77995 -11.14260 -11.03528 -10.92779 -10.67036 -10.58278 -10.45382 -9.78404 -9.32667 -8.95735 -7.95981 -7.74702 -7.22558 -6.41121 -4.48102 1.28710 1.76543 2.25804 3.00424 3.15067 3.16719 3.24581 3.63628 4.06604 4.06948 4.87483 4.93531 5.15207 5.32818 5.53368 5.60417 5.69327 5.84611 5.99428 6.22952 6.30580 6.42462 6.59312 6.68455 6.98840 7.08951 7.31488 7.57883 7.80060 7.97438 8.02189 8.25108 8.63388 9.15785 10.70890 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.047426 B = 0.004939 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.255517 B = 5668.092780 C = 5854.565325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.225 3.775 10 H 0.069 0.931 11 N -0.848 5.848 12 C 0.171 3.829 13 C -0.233 4.233 14 C -0.092 4.092 15 C -0.065 4.065 16 C -0.145 4.145 17 C -0.028 4.028 18 Cl -0.085 7.085 19 C -0.115 4.115 20 C 0.097 3.903 21 N -0.576 5.576 22 H 0.416 0.584 23 H 0.269 0.731 24 H 0.328 0.672 25 H 0.323 0.677 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 -9.289 -1.400 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.599 4.599 8 H 0.096 0.904 9 C 0.115 3.885 10 H 0.087 0.913 11 N -0.381 5.381 12 C 0.061 3.939 13 C -0.257 4.257 14 C -0.098 4.098 15 C -0.084 4.084 16 C -0.165 4.165 17 C -0.055 4.055 18 Cl -0.057 7.057 19 C -0.137 4.137 20 C -0.011 4.011 21 N -0.178 5.178 22 H 0.253 0.747 23 H 0.079 0.921 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.275 -9.412 -1.283 13.993 hybrid contribution -1.098 1.004 -0.693 1.641 sum 9.177 -8.408 -1.976 12.602 Atomic orbital electron populations 1.69887 1.06263 1.27551 1.48118 1.25025 0.94892 0.99141 0.93752 0.87004 0.80483 0.83663 0.78747 1.20018 1.21391 1.18118 1.21585 0.89328 0.95250 1.53778 0.90442 1.18349 0.93907 0.84590 0.91635 0.91319 1.59689 1.66922 1.05988 1.05508 1.20669 0.94219 0.92175 0.86869 1.21324 1.10173 0.92795 1.01429 1.19308 1.01296 0.94991 0.94177 1.20130 0.98002 0.90967 0.99271 1.20337 1.03766 0.98409 0.93999 1.20218 1.04063 0.86662 0.94607 1.98330 1.97177 1.30956 1.79220 1.19684 1.03449 0.90030 1.00536 1.17952 0.99763 0.87537 0.95885 1.41757 1.48078 1.08690 1.19230 0.74696 0.92070 0.86068 0.86010 0.83876 0.85517 0.85627 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.96 55.43 0.77 -24.36 15 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 19.48 24.61 -169.99 -4.18 15.30 15 4 H -0.27 -5.85 7.01 56.52 0.40 -5.46 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 6 H -0.26 -5.53 6.54 56.52 0.37 -5.16 15 7 C -0.56 -14.38 9.29 -34.44 -0.32 -14.70 15 8 H 0.08 2.22 7.98 -52.48 -0.42 1.80 15 9 C 0.22 4.91 2.71 -70.01 -0.19 4.72 15 10 H 0.07 1.54 7.15 -51.93 -0.37 1.17 15 11 N -0.85 -17.08 9.14 -6.65 -0.06 -17.14 15 12 C 0.17 3.40 5.82 -81.76 -0.48 2.93 15 13 C -0.23 -4.35 10.91 -37.67 -0.41 -4.76 15 14 C -0.09 -1.60 6.37 -105.13 -0.67 -2.27 15 15 C -0.06 -0.95 10.05 -39.65 -0.40 -1.34 15 16 C -0.15 -1.97 9.75 -39.91 -0.39 -2.36 15 17 C -0.03 -0.40 6.31 -39.46 -0.25 -0.65 15 18 Cl -0.09 -1.07 28.93 -51.86 -1.50 -2.57 15 19 C -0.12 -1.75 9.84 -39.40 -0.39 -2.13 15 20 C 0.10 1.68 7.28 -83.99 -0.61 1.06 15 21 N -0.58 -10.31 6.07 -6.95 -0.04 -10.36 15 22 H 0.42 6.76 8.96 -40.82 -0.37 6.39 15 23 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 24 H 0.33 6.16 8.98 -39.29 -0.35 5.81 15 25 H 0.32 6.65 4.29 -39.29 -0.17 6.48 15 26 H 0.14 2.42 8.06 -52.48 -0.42 1.99 15 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.13 1.40 8.06 -52.48 -0.42 0.98 15 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -27.87 265.09 -7.76 -35.63 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -2.54 Total: 17.07 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -4.20 Total: -17.57 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.67 Total: -51.86 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.18 Total: 15.30 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.87 -7.76 -35.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds